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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3427352	A-G	HOMO	INTRON
SBS	Chr1	15551962	C-T	HET	INTERGENIC
SBS	Chr2	19545597	C-T	HET	INTERGENIC
SBS	Chr2	20282309	T-A	HOMO	INTERGENIC
SBS	Chr2	26002315	G-A	HET	INTERGENIC
SBS	Chr3	4637800	T-A	HET	INTERGENIC
SBS	Chr3	13361125	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23110
SBS	Chr3	13361131	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23110
SBS	Chr3	24141490	G-C	HET	INTERGENIC
SBS	Chr3	26149441	T-C	HET	INTERGENIC
SBS	Chr3	26176245	T-A	HET	INTERGENIC
SBS	Chr4	15973102	G-A	HET	INTERGENIC
SBS	Chr4	32523044	C-T	HET	INTERGENIC
SBS	Chr5	24125187	C-T	HOMO	INTRON
SBS	Chr6	9709265	C-T	HOMO	INTERGENIC
SBS	Chr6	11099089	C-G	HOMO	INTERGENIC
SBS	Chr6	13288416	A-C	HET	INTERGENIC
SBS	Chr6	21489530	A-G	HET	INTERGENIC
SBS	Chr6	25600445	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42570
SBS	Chr7	7451764	T-C	HET	INTERGENIC
SBS	Chr7	8811045	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g15270
SBS	Chr7	11470728	C-T	HET	INTERGENIC
SBS	Chr7	12541907	T-G	HET	INTERGENIC
SBS	Chr7	15102421	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	18146769	A-C	HET	INTERGENIC
SBS	Chr7	18592066	T-C	HET	INTRON
SBS	Chr7	20177678	A-G	HOMO	UTR_3_PRIME
SBS	Chr7	22849540	G-T	HET	INTRON
SBS	Chr8	17949939	G-A	HET	INTERGENIC
SBS	Chr8	22625852	G-T	HET	INTERGENIC
SBS	Chr9	14884832	T-A	HOMO	INTERGENIC
SBS	Chr9	14988998	C-A	HOMO	INTERGENIC
SBS	Chr9	19523557	A-G	HET	INTRON
SBS	Chr10	1621017	G-A	HET	INTERGENIC
SBS	Chr10	1721385	G-A	HET	INTERGENIC
SBS	Chr10	5027993	A-C	HOMO	INTERGENIC
SBS	Chr10	18032936	C-T	HET	INTERGENIC
SBS	Chr10	18032941	C-T	HET	INTERGENIC
SBS	Chr10	21738825	C-T	HET	INTERGENIC
SBS	Chr10	22634844	G-A	HET	INTERGENIC
SBS	Chr11	5261028	C-A	HOMO	INTERGENIC
SBS	Chr12	4467923	A-G	HET	INTERGENIC
SBS	Chr12	16255156	T-C	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	705102	705106	4
Deletion	Chr10	1666548	1666556	8
Deletion	Chr4	2235247	2235248	1
Deletion	Chr2	2633762	2633764	2
Deletion	Chr12	4183160	4183166	6
Deletion	Chr12	5318091	5318129	38
Deletion	Chr8	5912037	5912052	15
Deletion	Chr10	6056994	6056999	5
Deletion	Chr3	6954312	6954319	7	LOC_Os03g12900
Deletion	Chr12	7279267	7279269	2
Deletion	Chr6	7522610	7522642	32
Deletion	Chr1	8521767	8521771	4
Deletion	Chr10	10179531	10179535	4
Deletion	Chr6	11851568	11851579	11	LOC_Os06g20590
Deletion	Chr7	13217444	13217446	2
Deletion	Chr1	16147625	16147628	3
Deletion	Chr9	17693172	17693173	1
Deletion	Chr6	17992754	17992767	13
Deletion	Chr9	19775055	19775060	5	LOC_Os09g33520
Deletion	Chr7	20038404	20038407	3
Deletion	Chr2	21825940	21825948	8
Deletion	Chr4	22936292	22936293	1
Deletion	Chr1	24167220	24167221	1
Deletion	Chr5	24176847	24176848	1	LOC_Os05g41270
Deletion	Chr6	25407479	25407499	20	LOC_Os06g42300
Deletion	Chr4	25856433	25856434	1	LOC_Os04g43690
Deletion	Chr8	25941461	25941466	5
Deletion	Chr3	32671911	32671920	9
Deletion	Chr1	34010147	34010148	1
Deletion	Chr1	36682174	36682181	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	35481144	35481145	2
Insertion	Chr12	26439692	26439695	4
Insertion	Chr11	26129615	26129616	2
Insertion	Chr2	34223194	34223194	1	LOC_Os02g55910
Insertion	Chr3	17846395	17846395	1
Insertion	Chr4	23192946	23192946	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5772843	17587042
Inversion	Chr8	5979114	18186375

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	13238105	Chr3	14197419	LOC_Os03g24920

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