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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2005410	T-A	HET	INTERGENIC
SBS	Chr1	9904929	G-T	HET	INTERGENIC
SBS	Chr1	9925852	C-A	HET	INTERGENIC
SBS	Chr1	13421198	C-G	HET	INTERGENIC
SBS	Chr1	25538550	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	8866651	T-C	HET	INTERGENIC
SBS	Chr2	31644893	A-G	HET	INTERGENIC
SBS	Chr3	1493516	C-T	HET	INTERGENIC
SBS	Chr3	6097040	A-T	HET	INTERGENIC
SBS	Chr3	9158288	C-T	HET	INTERGENIC
SBS	Chr3	18899016	G-A	HET	INTERGENIC
SBS	Chr4	1844226	C-G	HOMO	INTRON
SBS	Chr4	7425409	A-G	HET	INTERGENIC
SBS	Chr4	15036380	T-C	HET	INTERGENIC
SBS	Chr4	16971269	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g28650
SBS	Chr4	20418554	C-T	HET	INTERGENIC
SBS	Chr4	28273482	T-A	HOMO	INTERGENIC
SBS	Chr4	28273483	A-G	HOMO	INTERGENIC
SBS	Chr4	29434225	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g49310
SBS	Chr4	29823954	A-T	HET	INTERGENIC
SBS	Chr4	33184238	A-G	HOMO	INTERGENIC
SBS	Chr5	5155508	A-G	HET	INTERGENIC
SBS	Chr5	8036050	G-T	HET	INTRON
SBS	Chr5	9352790	G-A	HET	INTERGENIC
SBS	Chr5	29535944	T-A	HOMO	INTERGENIC
SBS	Chr6	13963828	G-A	HET	INTERGENIC
SBS	Chr6	14712573	C-A	HET	INTERGENIC
SBS	Chr7	7054866	T-A	HOMO	INTERGENIC
SBS	Chr7	9247049	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g15910
SBS	Chr7	19515986	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32680
SBS	Chr8	6183119	C-T	HET	INTERGENIC
SBS	Chr8	16290792	A-G	HOMO	INTERGENIC
SBS	Chr8	18463592	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30040
SBS	Chr9	1635409	C-A	HET	INTERGENIC
SBS	Chr9	12890251	G-A	HET	INTERGENIC
SBS	Chr10	1440878	G-T	HET	INTERGENIC
SBS	Chr11	2443941	G-A	HET	INTERGENIC
SBS	Chr11	25035356	G-A	HET	INTERGENIC
SBS	Chr11	27375804	G-C	HET	SYNONYMOUS_CODING
SBS	Chr12	2785822	C-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4818771	4818791	20
Deletion	Chr7	7055046	7055047	1
Deletion	Chr10	7961374	7961382	8
Deletion	Chr9	8516431	8517135	704	LOC_Os09g14410
Deletion	Chr1	10473617	10473618	1
Deletion	Chr9	12417191	12417198	7
Deletion	Chr11	12616712	12616722	10
Deletion	Chr9	13592760	13592776	16
Deletion	Chr6	14753726	14753728	2	LOC_Os06g25210
Deletion	Chr2	14774500	14774501	1	LOC_Os02g25340
Deletion	Chr11	15644260	15644261	1
Deletion	Chr8	16112082	16112083	1
Deletion	Chr9	18705878	18705894	16
Deletion	Chr2	19697590	19697591	1
Deletion	Chr9	22840257	22840269	12
Deletion	Chr5	25851803	25851805	2
Deletion	Chr8	26448128	26448131	3
Deletion	Chr4	27017014	27017024	10
Deletion	Chr6	27585811	27585814	3	LOC_Os06g45560
Deletion	Chr4	28031180	28031181	1
Deletion	Chr4	31906335	31906345	10
Deletion	Chr1	36626198	36626207	9	LOC_Os01g63190

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22527025	22527027	3
Insertion	Chr1	19824972	19824989	18	LOC_Os01g35789
Insertion	Chr9	10403603	10403604	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12719363	13831880
Inversion	Chr4	17906985	18125356	2
Inversion	Chr5	20904919	24235903

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4838478	Chr4	18124179	LOC_Os04g30370
Translocation	Chr10	10311978	Chr4	5525930
Translocation	Chr6	12594687	Chr1	32531298
Translocation	Chr11	13259843	Chr4	10208284	LOC_Os04g18470

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