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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16683757	G-A	HET	INTERGENIC
SBS	Chr1	37235869	C-A	HET	SYNONYMOUS_CODING
SBS	Chr1	37243617	C-T	HET	INTERGENIC
SBS	Chr1	40305275	C-A	HET	INTERGENIC
SBS	Chr1	4894594	T-A	HET	INTRON
SBS	Chr10	15859560	C-T	HET	INTERGENIC
SBS	Chr11	10822911	A-T	HET	INTERGENIC
SBS	Chr11	15707972	A-C	HET	INTRON
SBS	Chr12	11057555	T-C	HET	INTERGENIC
SBS	Chr12	15133123	G-C	HET	INTERGENIC
SBS	Chr2	26766881	C-T	HET	INTERGENIC
SBS	Chr3	11983391	G-T	HET	INTERGENIC
SBS	Chr3	14490773	A-G	HET	INTERGENIC
SBS	Chr4	19206830	A-C	HET	INTERGENIC
SBS	Chr4	20956769	C-T	HET	INTERGENIC
SBS	Chr4	22976953	C-T	HET	INTERGENIC
SBS	Chr4	23418908	C-G	HET	INTERGENIC
SBS	Chr4	737294	T-C	HET	INTERGENIC
SBS	Chr5	20422112	C-T	HET	INTERGENIC
SBS	Chr5	8654875	C-T	HOMO	INTERGENIC
SBS	Chr6	11031001	C-T	HET	UTR_3_PRIME
SBS	Chr6	13370862	T-A	HET	INTERGENIC
SBS	Chr6	15537405	G-A	HET	INTERGENIC
SBS	Chr7	437583	A-G	HET	UTR_3_PRIME
SBS	Chr7	909078	T-A	HET	INTERGENIC
SBS	Chr8	5146300	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	8049933	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13540
SBS	Chr9	11756376	G-T	HET	INTERGENIC
SBS	Chr9	11756379	G-A	HET	INTERGENIC
SBS	Chr9	2174389	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	171575	175752	4177	LOC_Os08g01270
Deletion	Chr2	2067488	2067497	9
Deletion	Chr6	8432660	8432664	4
Deletion	Chr6	9031431	9031432	1
Deletion	Chr8	9238881	9238882	1
Deletion	Chr1	9510996	9510999	3
Deletion	Chr6	14982940	14982941	1
Deletion	Chr5	16421110	16421196	86
Deletion	Chr9	16988425	16988444	19	LOC_Os09g27960
Deletion	Chr2	17721815	17721818	3	LOC_Os02g29780
Deletion	Chr10	23120571	23120572	1
Deletion	Chr7	23947740	23947748	8
Deletion	Chr6	24827907	24827914	7
Deletion	Chr5	25119514	25119521	7
Deletion	Chr7	25604799	25604816	17
Deletion	Chr1	25908997	25909001	4
Deletion	Chr11	28465109	28465114	5	LOC_Os11g47320
Deletion	Chr1	31406890	31487304	80414	14
Deletion	Chr1	36280607	36280621	14

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31479258	31479259	2
Insertion	Chr10	13168871	13168871	1
Insertion	Chr11	26038899	26038900	2
Insertion	Chr2	19388049	19388052	4
Insertion	Chr7	29661649	29661650	2
Insertion	Chr7	5850731	5850731	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6034242	6039469
Inversion	Chr1	6034253	6039473
Inversion	Chr5	13017625	13133510	LOC_Os05g22900
Inversion	Chr9	18021050	18098709	LOC_Os09g29780
Inversion	Chr9	18021072	18098709	LOC_Os09g29780
Inversion	Chr1	31405445	31487296	2
Inversion	Chr1	34890129	35007358	LOC_Os01g60309
Inversion	Chr1	35007366	35482296

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	171577	Chr3	21770968
Translocation	Chr8	175744	Chr3	21770956	LOC_Os08g01270
Translocation	Chr8	7876394	Chr6	30640342
Translocation	Chr9	17150812	Chr1	35482286
Translocation	Chr9	17150824	Chr1	35481071	LOC_Os01g61330
Translocation	Chr6	30640351	Chr5	16912247
Translocation	Chr3	35831855	Chr2	22723787	2
Translocation	Chr3	35836816	Chr2	22723743	2

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