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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31871685	T-C	HET	INTRON
SBS	Chr1	8275003	C-T	HET	INTERGENIC
SBS	Chr1	9239271	T-C	HET	INTERGENIC
SBS	Chr11	10483476	C-G	HET	INTERGENIC
SBS	Chr11	18229398	A-T	HET	INTRON
SBS	Chr11	18379100	G-C	HET	INTERGENIC
SBS	Chr11	25266243	A-T	HOMO	INTERGENIC
SBS	Chr11	28777490	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g47650
SBS	Chr12	14621796	T-A	HET	INTERGENIC
SBS	Chr12	15789538	T-C	HET	INTERGENIC
SBS	Chr12	16035099	C-T	HET	INTERGENIC
SBS	Chr2	12968598	T-C	HOMO	INTERGENIC
SBS	Chr2	16009406	C-A	HOMO	INTERGENIC
SBS	Chr3	16550462	C-A	HET	INTERGENIC
SBS	Chr3	24136249	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43290
SBS	Chr3	34839535	C-T	HET	INTERGENIC
SBS	Chr4	28357444	C-T	HOMO	INTERGENIC
SBS	Chr5	15424527	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g26550
SBS	Chr6	13015350	G-A	HOMO	INTERGENIC
SBS	Chr6	917378	T-A	HET	INTRON
SBS	Chr7	18011209	G-T	HET	INTERGENIC
SBS	Chr8	3850020	G-A	HOMO	INTRON
SBS	Chr8	5746637	A-T	HOMO	INTERGENIC
SBS	Chr9	15488257	G-A	HOMO	INTERGENIC
SBS	Chr9	15488258	C-A	HOMO	INTERGENIC
SBS	Chr9	22123114	T-C	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3495231	3495251	20
Deletion	Chr6	3811934	3811935	1
Deletion	Chr8	3836984	3836991	7
Deletion	Chr11	4567064	4567065	1
Deletion	Chr8	5442735	5442741	6	LOC_Os08g09380
Deletion	Chr1	7728690	7728691	1
Deletion	Chr9	7755551	7755559	8
Deletion	Chr6	8844289	8844291	2
Deletion	Chr10	8929313	8929317	4
Deletion	Chr1	9212623	9212631	8
Deletion	Chr12	13897264	13897265	1	LOC_Os12g24364
Deletion	Chr6	14641336	14641339	3
Deletion	Chr4	15229188	15229197	9
Deletion	Chr12	16035101	16035106	5
Deletion	Chr1	17098566	17098568	2
Deletion	Chr2	18930893	18930903	10
Deletion	Chr10	19118878	19122023	3145
Deletion	Chr10	19842832	19842834	2
Deletion	Chr2	20987534	20987535	1
Deletion	Chr11	21307915	21307921	6
Deletion	Chr4	21308352	21308353	1
Deletion	Chr12	21821936	21821954	18
Deletion	Chr3	22733137	22733138	1
Deletion	Chr3	24106577	24106578	1	LOC_Os03g43230
Deletion	Chr3	24135980	24135990	10
Deletion	Chr5	29736123	29736132	9	LOC_Os05g51790

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2580941	2580944	4
Insertion	Chr11	1910836	1910837	2
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr2	2937606	2937606	1
Insertion	Chr3	32775225	32775227	3

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4746039	Chr9	13583130
Translocation	Chr7	13266423	Chr3	14801961	LOC_Os07g23480
Translocation	Chr11	22565594	Chr9	8109342

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