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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13722673	A-C	HET	INTERGENIC
SBS	Chr1	14281075	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25280
SBS	Chr1	16143370	C-A	HET	INTERGENIC
SBS	Chr1	16603406	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	24513201	C-T	HET	INTERGENIC
SBS	Chr1	40211109	G-T	HOMO	INTERGENIC
SBS	Chr1	40218609	T-C	HOMO	INTERGENIC
SBS	Chr10	13812706	T-G	HET	INTRON
SBS	Chr10	13820193	C-A	HET	INTERGENIC
SBS	Chr10	22905633	G-T	HET	INTERGENIC
SBS	Chr10	3134328	A-T	HET	INTERGENIC
SBS	Chr10	4098450	A-C	HOMO	INTRON
SBS	Chr11	19299703	C-T	HET	INTERGENIC
SBS	Chr12	2082211	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04840
SBS	Chr12	2082218	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04840
SBS	Chr12	4705663	G-A	HET	INTERGENIC
SBS	Chr2	12887160	G-A	HET	INTERGENIC
SBS	Chr2	19332014	G-T	HET	UTR_5_PRIME
SBS	Chr2	19517941	C-T	HET	INTERGENIC
SBS	Chr2	35013511	C-A	HET	INTERGENIC
SBS	Chr2	5884939	A-C	HET	INTERGENIC
SBS	Chr3	14901752	C-T	HET	INTRON
SBS	Chr3	26985054	C-T	HOMO	UTR_3_PRIME
SBS	Chr3	27401335	T-G	HET	INTERGENIC
SBS	Chr4	11010425	G-A	HET	INTERGENIC
SBS	Chr4	19694684	T-A	HET	INTERGENIC
SBS	Chr4	4888093	A-G	HOMO	INTERGENIC
SBS	Chr5	1825868	C-A	HET	INTERGENIC
SBS	Chr5	2278000	C-T	HET	STOP_GAINED	LOC_Os05g04790
SBS	Chr5	24618642	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g42080
SBS	Chr5	29358341	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51180
SBS	Chr6	24597852	C-T	HOMO	INTERGENIC
SBS	Chr7	26760017	G-A	HET	INTERGENIC
SBS	Chr8	3354782	A-G	HOMO	INTERGENIC
SBS	Chr8	7133483	C-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	192739	192754	15
Deletion	Chr7	633919	633920	1	LOC_Os07g02060
Deletion	Chr9	1908231	1916646	8415
Deletion	Chr4	3064717	3064721	4	LOC_Os04g05920
Deletion	Chr10	3478370	3478371	1
Deletion	Chr4	4763548	4763551	3
Deletion	Chr9	6187456	6187458	2
Deletion	Chr1	6395986	6395987	1
Deletion	Chr3	6439786	6439787	1
Deletion	Chr4	7154216	7154223	7
Deletion	Chr1	7487572	7487576	4
Deletion	Chr7	9359689	9359690	1	LOC_Os07g16054
Deletion	Chr9	9981779	9981784	5
Deletion	Chr12	10872444	10872452	8
Deletion	Chr3	11248369	11248385	16
Deletion	Chr8	12869966	12869970	4
Deletion	Chr11	13111035	13111050	15
Deletion	Chr3	13195069	13195082	13
Deletion	Chr3	14081347	14081353	6
Deletion	Chr2	17959783	17959787	4	LOC_Os02g30210
Deletion	Chr11	18013384	18013386	2
Deletion	Chr12	19500573	19500574	1
Deletion	Chr4	19877684	19877691	7
Deletion	Chr4	20709177	20709180	3	LOC_Os04g34170
Deletion	Chr8	21263899	21263901	2
Deletion	Chr4	22647001	22661000	14000	3
Deletion	Chr6	25474249	25474253	4	LOC_Os06g42380
Deletion	Chr3	26658306	26658314	8
Deletion	Chr5	28341507	28341509	2
Deletion	Chr1	32575100	32575105	5	LOC_Os01g56500
Deletion	Chr1	34127747	34127750	3
Deletion	Chr3	36073616	36073617	1	LOC_Os03g63850

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	40218598	40218620	23
Insertion	Chr2	12864063	12864066	4
Insertion	Chr3	24678623	24678623	1
Insertion	Chr3	8453398	8453405	8

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	22646520	22680439	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8428042	Chr1	23528701	LOC_Os05g14820

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