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Mutant Information |
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Mutant Name | FN1034-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1034-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 17
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 4831052 | T-A | HOMO | INTERGENIC | |
SBS | Chr2 | 13191157 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 21805686 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 24361482 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 30236539 | A-G | HOMO | SPLICE_SITE_REGION | |
SBS | Chr4 | 10292766 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g18610 |
SBS | Chr5 | 6586122 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 2609968 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 8716231 | A-G | HET | INTERGENIC | |
SBS | Chr7 | 24601872 | G-A | HOMO | INTRON | |
SBS | Chr8 | 21310522 | G-T | HOMO | INTERGENIC | |
SBS | Chr9 | 8330241 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14070 |
SBS | Chr10 | 3216749 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr10 | 12233589 | C-T | HOMO | INTERGENIC | |
SBS | Chr11 | 7328639 | A-C | HOMO | INTERGENIC | |
SBS | Chr11 | 13426489 | G-A | HET | INTRON | |
SBS | Chr11 | 15024658 | T-G | HET | INTERGENIC |
Deletions: 18
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 2538988 | 2538990 | 2 | LOC_Os06g05610 |
Deletion | Chr12 | 3564826 | 3564866 | 40 | |
Deletion | Chr3 | 4854487 | 4854498 | 11 | |
Deletion | Chr2 | 5398121 | 5400548 | 2427 | LOC_Os02g10280 |
Deletion | Chr3 | 5653213 | 5653220 | 7 | |
Deletion | Chr7 | 6966903 | 6966909 | 6 | |
Deletion | Chr1 | 10098199 | 10098202 | 3 | |
Deletion | Chr6 | 10379006 | 10379014 | 8 | LOC_Os06g17880 |
Deletion | Chr4 | 12478192 | 12492789 | 14597 | 4 |
Deletion | Chr9 | 14691925 | 14691935 | 10 | |
Deletion | Chr1 | 15946444 | 15946458 | 14 | |
Deletion | Chr11 | 17796096 | 17796117 | 21 | |
Deletion | Chr7 | 21880929 | 21880934 | 5 | |
Deletion | Chr11 | 25696001 | 25805000 | 109000 | 19 |
Deletion | Chr1 | 26914945 | 26914947 | 2 | |
Deletion | Chr2 | 29303670 | 29303674 | 4 | LOC_Os02g47900 |
Deletion | Chr1 | 29795385 | 29795387 | 2 | LOC_Os01g51820 |
Deletion | Chr1 | 32411434 | 32411439 | 5 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 20792609 | 20792610 | 2 | |
Insertion | Chr11 | 14602519 | 14602520 | 2 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 25159004 | 25696705 | LOC_Os11g42660 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 8689419 | Chr2 | 18266890 | |
Translocation | Chr9 | 10385681 | Chr7 | 15262553 | |
Translocation | Chr12 | 13386894 | Chr10 | 15370826 | LOC_Os10g29570 |
Translocation | Chr12 | 20934581 | Chr2 | 10798280 | |
Translocation | Chr6 | 21083095 | Chr4 | 12492778 | LOC_Os04g22060 |
Translocation | Chr6 | 21083117 | Chr4 | 12478203 | LOC_Os04g22030 |