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Mutant Information

Mutant Name	FN1034-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1034-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	12233589	C-T	HOMO	INTERGENIC
SBS	Chr10	3216749	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	13426489	G-A	HET	INTRON
SBS	Chr11	15024658	T-G	HET	INTERGENIC
SBS	Chr11	7328639	A-C	HOMO	INTERGENIC
SBS	Chr2	13191157	G-A	HET	INTERGENIC
SBS	Chr2	4831052	T-A	HOMO	INTERGENIC
SBS	Chr3	21805686	C-T	HOMO	INTERGENIC
SBS	Chr3	24361482	A-T	HET	INTERGENIC
SBS	Chr3	30236539	A-G	HOMO	SPLICE_SITE_REGION
SBS	Chr4	10292766	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g18610
SBS	Chr5	6586122	T-C	HET	INTERGENIC
SBS	Chr7	24601872	G-A	HOMO	INTRON
SBS	Chr7	2609968	C-T	HOMO	INTERGENIC
SBS	Chr7	8716231	A-G	HET	INTERGENIC
SBS	Chr8	21310522	G-T	HOMO	INTERGENIC
SBS	Chr9	8330241	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14070

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2538988	2538990	2	LOC_Os06g05610
Deletion	Chr12	3564826	3564866	40
Deletion	Chr3	4854487	4854498	11
Deletion	Chr2	5398121	5400548	2427	LOC_Os02g10280
Deletion	Chr3	5653213	5653220	7
Deletion	Chr7	6966903	6966909	6
Deletion	Chr1	10098199	10098202	3
Deletion	Chr6	10379006	10379014	8	LOC_Os06g17880
Deletion	Chr4	12478192	12492789	14597	4
Deletion	Chr9	14691925	14691935	10
Deletion	Chr1	15946444	15946458	14
Deletion	Chr11	17796096	17796117	21
Deletion	Chr7	21880929	21880934	5
Deletion	Chr11	25696001	25805000	109000	19
Deletion	Chr1	26914945	26914947	2
Deletion	Chr2	29303670	29303674	4	LOC_Os02g47900
Deletion	Chr1	29795385	29795387	2	LOC_Os01g51820
Deletion	Chr1	32411434	32411439	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	14602519	14602520	2
Insertion	Chr6	20792609	20792610	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25159004	25696705	LOC_Os11g42660

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8689419	Chr2	18266890
Translocation	Chr9	10385681	Chr7	15262553
Translocation	Chr12	13386894	Chr10	15370826	LOC_Os10g29570
Translocation	Chr12	20934581	Chr2	10798280
Translocation	Chr6	21083095	Chr4	12492778	LOC_Os04g22060
Translocation	Chr6	21083117	Chr4	12478203	LOC_Os04g22030