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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20234071	G-T	HET	INTERGENIC
SBS	Chr1	25377788	A-T	HET	INTERGENIC
SBS	Chr1	28425161	G-T	HOMO	STOP_GAINED	LOC_Os01g49420
SBS	Chr1	38653332	G-T	HOMO	INTRON
SBS	Chr1	7645418	T-G	HET	INTERGENIC
SBS	Chr11	11477660	G-A	HET	INTERGENIC
SBS	Chr11	23768054	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g39870
SBS	Chr12	10271759	G-T	HOMO	INTERGENIC
SBS	Chr12	4043245	A-G	HOMO	INTERGENIC
SBS	Chr2	14655594	A-T	HET	INTERGENIC
SBS	Chr2	26048605	C-T	HET	INTERGENIC
SBS	Chr2	32764606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr3	1337746	T-C	HOMO	INTERGENIC
SBS	Chr4	17598189	G-A	HET	INTERGENIC
SBS	Chr4	992962	G-C	HET	INTERGENIC
SBS	Chr5	21423384	C-T	HOMO	INTERGENIC
SBS	Chr5	23177607	T-A	HOMO	INTERGENIC
SBS	Chr6	24031540	A-T	HET	INTERGENIC
SBS	Chr6	5111272	G-A	HET	INTERGENIC
SBS	Chr6	5655679	A-C	HET	INTERGENIC
SBS	Chr6	6831492	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g12590
SBS	Chr7	16151091	G-A	HOMO	INTRON
SBS	Chr7	7482753	A-T	HET	INTERGENIC
SBS	Chr8	11719157	A-T	HET	INTERGENIC
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr9	11789543	A-T	HET	INTRON
SBS	Chr9	13225981	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21820
SBS	Chr9	14756658	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	16010387	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26490
SBS	Chr9	18377609	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g30190
SBS	Chr9	5495450	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g10080

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	205121	205122	1
Deletion	Chr6	1673202	1673205	3
Deletion	Chr2	1809213	1809215	2	LOC_Os02g04150
Deletion	Chr1	6517928	6517934	6
Deletion	Chr12	9368001	9445000	77000	14
Deletion	Chr12	9453001	9824000	371000	64
Deletion	Chr7	11645879	11645882	3
Deletion	Chr7	11951522	11951527	5	LOC_Os07g20680
Deletion	Chr2	12724921	12724931	10
Deletion	Chr5	13827323	13827324	1
Deletion	Chr12	14410476	14410479	3
Deletion	Chr4	16147299	16147303	4	LOC_Os04g27320
Deletion	Chr8	16880746	16880767	21
Deletion	Chr8	18468001	18883000	415000	56
Deletion	Chr5	18819315	18819316	1
Deletion	Chr4	19224210	19224211	1
Deletion	Chr7	21934995	21940401	5406	LOC_Os07g36660
Deletion	Chr3	23650788	23650797	9
Deletion	Chr2	23941519	23944114	2595	LOC_Os02g39650
Deletion	Chr5	24227665	24227669	4
Deletion	Chr12	25426690	25426697	7
Deletion	Chr6	29892712	29892721	9	LOC_Os06g49340
Deletion	Chr2	34898578	34898579	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14275371	14275372	2
Insertion	Chr9	15014805	15014808	4

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	822541	Chr9	9423694	2
Translocation	Chr6	9348731	Chr1	41494771
Translocation	Chr11	17023431	Chr2	8802336	LOC_Os02g15640
Translocation	Chr8	18233344	Chr2	23944133	2
Translocation	Chr8	20670628	Chr7	21940013	2

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