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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2004765	G-A	HET	INTERGENIC
SBS	Chr1	36895447	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	36895520	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63620
SBS	Chr10	21314922	T-A	HOMO	INTRON
SBS	Chr10	21423634	T-A	HOMO	INTERGENIC
SBS	Chr11	12307368	C-T	HET	INTERGENIC
SBS	Chr11	21184481	C-A	HET	INTERGENIC
SBS	Chr11	23204832	C-T	HOMO	INTERGENIC
SBS	Chr11	26545797	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g43950
SBS	Chr11	8562967	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15180
SBS	Chr11	9147620	A-T	HET	INTRON
SBS	Chr12	17486294	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29434
SBS	Chr12	25867210	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	20214860	G-A	HET	INTERGENIC
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	20761306	A-T	HET	INTERGENIC
SBS	Chr2	3882185	G-A	HET	INTRON
SBS	Chr3	21445420	G-A	HET	INTERGENIC
SBS	Chr3	28161928	G-A	HET	INTERGENIC
SBS	Chr3	32300670	C-T	HET	INTERGENIC
SBS	Chr4	10430228	G-T	HOMO	INTERGENIC
SBS	Chr4	12926076	G-C	HET	INTERGENIC
SBS	Chr4	4805866	G-T	HOMO	INTERGENIC
SBS	Chr5	10616827	T-C	HET	INTERGENIC
SBS	Chr5	17796154	C-T	HET	INTERGENIC
SBS	Chr5	18045057	G-T	HET	INTERGENIC
SBS	Chr5	8462694	C-T	HOMO	INTERGENIC
SBS	Chr6	1152088	T-A	HOMO	INTERGENIC
SBS	Chr6	12365908	T-G	HET	INTERGENIC
SBS	Chr6	16661643	G-A	HET	INTERGENIC
SBS	Chr6	3280889	G-A	HOMO	INTERGENIC
SBS	Chr7	10488459	G-A	HET	INTERGENIC
SBS	Chr7	8030499	T-C	HET	INTERGENIC
SBS	Chr8	17922241	C-A	HOMO	INTRON
SBS	Chr8	4024814	G-A	HET	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	527413	527415	2
Deletion	Chr11	1865026	1865027	1	LOC_Os11g04460
Deletion	Chr9	1897708	1899123	1415	LOC_Os09g03750
Deletion	Chr6	2214221	2214223	2
Deletion	Chr2	3238634	3238652	18	LOC_Os02g06500
Deletion	Chr2	3475858	3475870	12
Deletion	Chr9	5589738	5589741	3
Deletion	Chr8	6279228	6279230	2
Deletion	Chr7	8264043	8264076	33
Deletion	Chr7	8403001	8581000	178000	22
Deletion	Chr2	8870408	8870409	1
Deletion	Chr7	11160324	11160328	4
Deletion	Chr6	12666541	12666560	19
Deletion	Chr11	13313472	13333779	20307	4
Deletion	Chr3	14292439	14292465	26	LOC_Os03g25030
Deletion	Chr12	17486727	17486733	6
Deletion	Chr9	19048183	19048191	8
Deletion	Chr5	19464260	19464265	5
Deletion	Chr12	20728406	20728407	1
Deletion	Chr3	24027380	24027382	2
Deletion	Chr3	24342396	24342402	6
Deletion	Chr1	26163932	26163933	1	LOC_Os01g46020
Deletion	Chr6	26216914	26216934	20	LOC_Os06g43590
Deletion	Chr5	26233863	26233866	3
Deletion	Chr3	31633423	31633455	32
Deletion	Chr1	35738842	35738857	15

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	3746225	3746225	1
Insertion	Chr11	9084537	9084537	1
Insertion	Chr2	19427799	19427804	6
Insertion	Chr4	8338683	8338683	1
Insertion	Chr9	12703076	12703077	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8275823	8403299	LOC_Os07g14514

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1897705	Chr2	21866910	LOC_Os09g03750
Translocation	Chr9	1899085	Chr2	21866876	LOC_Os09g03750
Translocation	Chr6	3815256	Chr5	17887274	2
Translocation	Chr6	3815847	Chr5	17887288	2
Translocation	Chr9	13753267	Chr8	23868697	LOC_Os09g23190
Translocation	Chr4	17080140	Chr2	8120312	LOC_Os02g14720

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