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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	4370219	G-C	HOMO	INTRON
SBS	Chr11	17024672	G-A	HET	INTERGENIC
SBS	Chr12	18193598	T-G	HET	INTERGENIC
SBS	Chr2	21343655	T-C	HOMO	INTERGENIC
SBS	Chr2	25840371	A-G	HET	INTRON
SBS	Chr2	28934553	A-C	HET	INTERGENIC
SBS	Chr2	6088675	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11780
SBS	Chr4	11012717	C-T	HET	INTERGENIC
SBS	Chr4	14575820	T-G	HET	INTERGENIC
SBS	Chr4	19186729	A-G	HOMO	INTERGENIC
SBS	Chr5	10240891	G-A	HET	INTRON
SBS	Chr5	8239122	G-A	HET	INTERGENIC
SBS	Chr6	11300970	G-A	HET	INTERGENIC
SBS	Chr6	11300971	T-A	HET	INTERGENIC
SBS	Chr6	11301954	A-G	HET	INTERGENIC
SBS	Chr6	5091064	C-A	HOMO	INTRON
SBS	Chr6	9043929	C-T	HOMO	INTERGENIC
SBS	Chr6	9043930	C-T	HOMO	INTERGENIC
SBS	Chr7	20192435	T-C	HET	INTERGENIC
SBS	Chr7	23790402	T-C	HET	INTRON
SBS	Chr7	25440510	C-T	HET	INTERGENIC
SBS	Chr9	8161932	T-A	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2228001	2238000	10000	LOC_Os10g04674
Deletion	Chr3	2765366	2765372	6
Deletion	Chr3	4520548	4520558	10
Deletion	Chr12	7673638	7673639	1
Deletion	Chr5	8795627	8795636	9
Deletion	Chr5	8899539	8899540	1
Deletion	Chr9	10241566	10241570	4
Deletion	Chr6	11301871	11301897	26
Deletion	Chr2	13830951	13830955	4
Deletion	Chr10	15912157	15912158	1
Deletion	Chr9	16481001	16516000	35000	9
Deletion	Chr6	19457443	19457455	12	LOC_Os06g33420
Deletion	Chr3	22404912	22404918	6
Deletion	Chr1	24730633	24730681	48
Deletion	Chr2	24923001	25348000	425000	57
Deletion	Chr2	27126009	27126023	14
Deletion	Chr6	27776091	27776099	8	LOC_Os06g45880
Deletion	Chr4	29897484	29897488	4
Deletion	Chr3	29992459	29992460	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	27140485	27140485	1
Insertion	Chr4	13912052	13912054	3
Insertion	Chr4	31920391	31920392	2
Insertion	Chr8	1184724	1184739	16
Insertion	Chr9	3369837	3369838	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3894324	4289110	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	986699	Chr2	32475676	2
Translocation	Chr11	3249832	Chr1	2526173	LOC_Os11g06670
Translocation	Chr7	6399812	Chr5	10232217
Translocation	Chr10	11115534	Chr4	30456390
Translocation	Chr6	11823882	Chr4	7678411
Translocation	Chr12	24913012	Chr2	24923057

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