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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31322469	C-A	HET	INTERGENIC
SBS	Chr1	34105562	A-G	HET	INTERGENIC
SBS	Chr10	12186064	G-A	HET	INTERGENIC
SBS	Chr10	7188383	C-T	HET	INTERGENIC
SBS	Chr10	8372521	C-T	HET	INTERGENIC
SBS	Chr11	13175982	C-T	HOMO	INTERGENIC
SBS	Chr11	13287561	G-T	HET	INTERGENIC
SBS	Chr11	14183016	G-A	HOMO	INTERGENIC
SBS	Chr11	18844228	C-T	HOMO	INTERGENIC
SBS	Chr12	13889858	C-A	HOMO	INTERGENIC
SBS	Chr12	15984451	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27240
SBS	Chr12	15984452	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27240
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	3702279	A-T	HET	INTERGENIC
SBS	Chr2	32823604	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53660
SBS	Chr3	14637264	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g25580
SBS	Chr3	3215733	C-G	HET	UTR_3_PRIME
SBS	Chr3	3324188	G-T	HOMO	INTRON
SBS	Chr3	34919009	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g61580
SBS	Chr3	4204309	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr4	16785967	T-A	HET	INTERGENIC
SBS	Chr5	1337196	C-T	HOMO	INTERGENIC
SBS	Chr5	1337300	C-G	HOMO	INTERGENIC
SBS	Chr5	22459723	A-T	HET	INTERGENIC
SBS	Chr5	9707274	G-T	HET	INTRON
SBS	Chr6	10903194	C-T	HET	INTRON
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	17189636	T-A	HOMO	INTERGENIC
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	25869239	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	28637031	G-A	HET	INTERGENIC
SBS	Chr6	31199284	G-A	HET	INTERGENIC
SBS	Chr7	598997	G-A	HET	INTERGENIC
SBS	Chr8	10519098	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	23685145	T-A	HOMO	INTERGENIC
SBS	Chr9	15431312	T-A	HOMO	UTR_3_PRIME

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	577185	577186	1	LOC_Os08g01930
Deletion	Chr4	2826780	2826786	6	LOC_Os04g05580
Deletion	Chr5	5494013	5494014	1
Deletion	Chr2	6050203	6050204	1
Deletion	Chr4	8768911	8768912	1	LOC_Os04g16150
Deletion	Chr1	9225230	9225240	10	LOC_Os01g16290
Deletion	Chr4	11354438	11354439	1
Deletion	Chr7	12528188	12528200	12
Deletion	Chr7	13435507	13435508	1
Deletion	Chr4	13599397	13599398	1	LOC_Os04g23799
Deletion	Chr9	15435001	15529000	94000	13
Deletion	Chr9	15553045	15553071	26
Deletion	Chr5	16704825	16704831	6
Deletion	Chr8	18952935	18952947	12
Deletion	Chr10	19072193	19072198	5
Deletion	Chr7	21937130	21938568	1438
Deletion	Chr2	21990442	21990459	17
Deletion	Chr6	26853129	26853132	3
Deletion	Chr6	28021616	28021618	2
Deletion	Chr4	34462818	34462821	3
Deletion	Chr1	35600117	35600118	1
Deletion	Chr1	41294512	41294514	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	5904018	5904018	1
Insertion	Chr6	389534	389534	1
Insertion	Chr8	4260235	4260236	2

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr4	11551033	Chr2	17320469
Translocation	Chr11	17512068	Chr7	13570853
Translocation	Chr7	21937135	Chr1	7227809
Translocation	Chr7	21938557	Chr1	7234877
Translocation	Chr10	22171159	Chr7	10246949

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