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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15221410	G-A	HET	INTRON
SBS	Chr1	2665738	C-A	HOMO	INTRON
SBS	Chr1	473002	T-C	HET	INTERGENIC
SBS	Chr1	8053270	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	13751668	A-T	HET	INTERGENIC
SBS	Chr11	15180057	G-A	HOMO	INTERGENIC
SBS	Chr11	19563436	A-T	HET	INTERGENIC
SBS	Chr11	23043896	A-T	HET	INTERGENIC
SBS	Chr11	24895229	G-A	HOMO	INTERGENIC
SBS	Chr2	17809934	C-A	HET	INTERGENIC
SBS	Chr2	7356290	T-A	HET	INTERGENIC
SBS	Chr3	24725631	C-T	HOMO	INTERGENIC
SBS	Chr4	12855425	T-C	HOMO	INTERGENIC
SBS	Chr4	23365109	A-G	HET	INTRON
SBS	Chr4	25652743	C-A	HOMO	INTERGENIC
SBS	Chr4	5734	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g01008
SBS	Chr6	1786888	C-G	HET	INTERGENIC
SBS	Chr6	17938521	C-T	HET	UTR_3_PRIME
SBS	Chr6	2421030	C-T	HOMO	UTR_3_PRIME
SBS	Chr6	5343416	C-T	HOMO	INTERGENIC
SBS	Chr6	8906378	C-T	HET	INTERGENIC
SBS	Chr6	9406954	A-C	HET	INTRON
SBS	Chr7	28130696	C-T	HET	INTERGENIC
SBS	Chr7	8437630	T-C	HOMO	INTERGENIC
SBS	Chr8	14069721	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	18415331	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29980
SBS	Chr8	5929047	C-T	HET	INTERGENIC
SBS	Chr9	13635244	A-T	HOMO	INTRON
SBS	Chr9	14211253	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g23840

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4027318	4027319	1
Deletion	Chr4	5824321	5824326	5
Deletion	Chr5	6496271	6496279	8
Deletion	Chr10	9038001	9732000	694000	110
Deletion	Chr10	9743001	9846000	103000	17
Deletion	Chr4	18166041	18166042	1
Deletion	Chr10	20353001	20412000	59000	12
Deletion	Chr7	24144354	24144355	1
Deletion	Chr6	27052892	27052900	8
Deletion	Chr4	33570579	33570594	15

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	5477532	5477535	4
Insertion	Chr8	16212030	16212031	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6718732	7278269	2
Inversion	Chr2	7041306	20817677	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6663463	Chr2	24434859	LOC_Os02g40340
Translocation	Chr6	18071563	Chr2	14643662
Translocation	Chr6	18078831	Chr2	7289080
Translocation	Chr3	25607285	Chr2	7041443	LOC_Os02g13210

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