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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28334529	A-T	HET	INTERGENIC
SBS	Chr1	35796100	T-A	HET	INTERGENIC
SBS	Chr1	40416286	G-A	HET	INTERGENIC
SBS	Chr1	9395740	C-A	HET	INTRON
SBS	Chr10	22905633	G-T	HOMO	INTERGENIC
SBS	Chr12	1173294	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	24429893	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g39590
SBS	Chr12	3323532	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06840
SBS	Chr12	3323534	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06840
SBS	Chr12	3335484	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06860
SBS	Chr12	4966880	T-A	HET	INTERGENIC
SBS	Chr2	19307946	A-G	HET	INTERGENIC
SBS	Chr3	27940619	G-C	HET	INTERGENIC
SBS	Chr3	6762038	A-G	HOMO	INTERGENIC
SBS	Chr4	10579442	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19060
SBS	Chr4	10634328	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	1829220	T-A	HET	INTERGENIC
SBS	Chr4	20051518	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g33120
SBS	Chr4	24901550	C-G	HET	INTERGENIC
SBS	Chr4	8412105	G-A	HET	INTERGENIC
SBS	Chr6	1266185	T-C	HET	INTERGENIC
SBS	Chr7	13475601	A-G	HET	INTERGENIC
SBS	Chr7	5951050	C-A	HET	INTERGENIC
SBS	Chr8	23241237	A-G	HOMO	INTERGENIC
SBS	Chr8	23848019	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	1767768	G-A	HET	INTERGENIC
SBS	Chr9	9890749	G-A	HET	INTERGENIC

Deletions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	728404	728411	7
Deletion	Chr5	1163124	1163145	21
Deletion	Chr7	2586780	2586785	5
Deletion	Chr3	3885185	3885186	1
Deletion	Chr4	3955001	4123000	168000	31
Deletion	Chr9	6161901	6161909	8	LOC_Os09g11110
Deletion	Chr1	6316525	6316526	1
Deletion	Chr3	6762838	6764306	1468	LOC_Os03g12680
Deletion	Chr7	7794563	7794568	5
Deletion	Chr7	7815604	7815605	1	LOC_Os07g13634
Deletion	Chr11	8504811	8504843	32
Deletion	Chr9	9351193	9351200	7
Deletion	Chr10	9552389	9552391	2
Deletion	Chr9	9622849	9622916	67
Deletion	Chr3	11237083	11237089	6
Deletion	Chr4	11363426	11363461	35
Deletion	Chr1	13679880	13679893	13
Deletion	Chr12	14712629	14712633	4
Deletion	Chr12	16190001	16439000	249000	37
Deletion	Chr12	16447001	16603000	156000	20
Deletion	Chr1	16642508	16642509	1
Deletion	Chr12	16651001	17111000	460000	70
Deletion	Chr6	16773929	16773934	5
Deletion	Chr12	17052688	17052702	14
Deletion	Chr12	22941095	22941096	1
Deletion	Chr7	24147536	24147537	1
Deletion	Chr5	24404749	24404759	10	LOC_Os05g41720
Deletion	Chr12	26242849	26242850	1
Deletion	Chr4	26457481	26457498	17
Deletion	Chr1	27775272	27775273	1
Deletion	Chr3	28320949	28320957	8
Deletion	Chr4	28687291	28687292	1
Deletion	Chr3	32369328	32369340	12
Deletion	Chr1	34283957	34283977	20
Deletion	Chr4	35078669	35078690	21
Deletion	Chr2	35231262	35231267	5	LOC_Os02g57500
Deletion	Chr1	42451317	42451321	4	LOC_Os01g73234

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	27699077	27699078	2
Insertion	Chr2	5449446	5449448	3
Insertion	Chr5	153793	153793	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5772843	17587091
Inversion	Chr3	33101708	33949285
Inversion	Chr3	33103784	33949290	LOC_Os03g58150

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4446676	Chr3	33103827	LOC_Os03g58150

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