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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14952885	G-A	HET	INTERGENIC
SBS	Chr1	19106605	G-A	HET	INTERGENIC
SBS	Chr1	21442377	G-A	HET	INTERGENIC
SBS	Chr1	34916803	G-A	HET	INTERGENIC
SBS	Chr1	36681689	G-A	HET	INTERGENIC
SBS	Chr1	40960773	A-T	HET	INTERGENIC
SBS	Chr10	13152008	C-G	HET	INTRON
SBS	Chr11	16679323	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28780
SBS	Chr11	25798806	C-G	HET	INTERGENIC
SBS	Chr12	16330400	T-G	HOMO	INTRON
SBS	Chr12	26479204	G-A	HET	INTRON
SBS	Chr2	34346557	C-T	HET	INTERGENIC
SBS	Chr2	35377489	C-A	HET	INTRON
SBS	Chr2	704758	T-C	HET	INTERGENIC
SBS	Chr2	999902	G-A	HET	INTERGENIC
SBS	Chr3	15334337	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26870
SBS	Chr3	22779235	A-C	HET	INTERGENIC
SBS	Chr3	9838659	T-G	HET	INTERGENIC
SBS	Chr4	10724103	C-T	HET	INTERGENIC
SBS	Chr4	22887598	G-A	HOMO	INTRON
SBS	Chr4	22887599	T-A	HOMO	INTRON
SBS	Chr4	22887600	G-A	HOMO	INTRON
SBS	Chr4	6942766	G-A	HET	INTERGENIC
SBS	Chr5	15483154	T-A	HET	INTRON
SBS	Chr5	21856773	C-A	HOMO	INTERGENIC
SBS	Chr5	23816746	C-A	HOMO	INTERGENIC
SBS	Chr5	9810536	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17140
SBS	Chr6	28962474	A-G	HOMO	INTERGENIC
SBS	Chr7	16590654	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28380
SBS	Chr7	16835086	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28760
SBS	Chr7	20163930	G-A	HET	INTERGENIC
SBS	Chr7	26040846	C-T	HOMO	INTRON
SBS	Chr8	8036405	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13510
SBS	Chr9	22642418	G-T	HET	INTERGENIC
SBS	Chr9	2992485	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g06360

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2506377	2506406	29	LOC_Os02g05230
Deletion	Chr10	3178522	3178526	4
Deletion	Chr3	5463260	5463262	2
Deletion	Chr3	7522766	7522768	2
Deletion	Chr9	8076120	8076128	8
Deletion	Chr1	10210028	10210030	2
Deletion	Chr9	11207701	11207702	1
Deletion	Chr9	11853148	11853149	1	LOC_Os09g19800
Deletion	Chr1	13009740	13009754	14
Deletion	Chr6	13032013	13032015	2	LOC_Os06g22420
Deletion	Chr1	15857318	15860947	3629	LOC_Os01g28310
Deletion	Chr7	16687867	16687877	10	LOC_Os07g28510
Deletion	Chr3	18009196	18009221	25	LOC_Os03g31560
Deletion	Chr4	19438046	19438058	12
Deletion	Chr11	19987001	20009000	22000	6
Deletion	Chr8	21003223	21030066	26843	5
Deletion	Chr8	22010324	22010330	6
Deletion	Chr5	22360554	22360556	2
Deletion	Chr4	29128072	29128081	9
Deletion	Chr2	29914390	29914394	4	LOC_Os02g48900
Deletion	Chr1	30499711	30499716	5
Deletion	Chr2	31939175	31939176	1
Deletion	Chr3	33262209	33262226	17
Deletion	Chr1	33931070	33931085	15	LOC_Os01g58700
Deletion	Chr2	34784407	34784408	1
Deletion	Chr1	36752642	36752657	15

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	33899640	33899640	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7194114	8432162

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	13456063	Chr2	16375780	2
Translocation	Chr4	16416709	Chr1	32335247	LOC_Os01g56150
Translocation	Chr11	20126825	Chr3	8265500	LOC_Os03g15130
Translocation	Chr12	20138349	Chr5	13277466	LOC_Os12g33280
Translocation	Chr12	26422802	Chr1	38696850
Translocation	Chr12	26479258	Chr1	38696806	LOC_Os12g42610

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