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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19722876	C-T	HET	INTERGENIC
SBS	Chr1	27234685	A-C	HET	INTERGENIC
SBS	Chr1	30561183	G-A	HET	UTR_5_PRIME
SBS	Chr3	6415491	C-T	HOMO	INTERGENIC
SBS	Chr3	16784680	C-T	HOMO	INTERGENIC
SBS	Chr3	19344268	G-A	HOMO	INTERGENIC
SBS	Chr3	31216766	A-T	HET	UTR_3_PRIME
SBS	Chr3	31216767	A-T	HET	UTR_3_PRIME
SBS	Chr3	31263051	G-A	HET	INTERGENIC
SBS	Chr4	12597770	A-C	HET	INTERGENIC
SBS	Chr6	5913473	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g11280
SBS	Chr6	11825716	T-C	HET	INTERGENIC
SBS	Chr6	11825722	T-G	HET	INTERGENIC
SBS	Chr6	12718864	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g21990
SBS	Chr6	23953686	C-T	HOMO	INTERGENIC
SBS	Chr6	25486077	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42400
SBS	Chr7	234003	A-C	HET	INTERGENIC
SBS	Chr7	5588487	C-T	HET	INTERGENIC
SBS	Chr7	5588490	C-A	HET	INTERGENIC
SBS	Chr7	5588491	C-T	HET	INTERGENIC
SBS	Chr7	28113117	G-A	HET	INTERGENIC
SBS	Chr8	523969	T-C	HET	INTERGENIC
SBS	Chr8	537343	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01870
SBS	Chr8	25205125	C-T	HOMO	INTERGENIC
SBS	Chr10	10268167	C-G	HET	INTERGENIC
SBS	Chr11	13989076	C-A	HET	INTERGENIC
SBS	Chr11	18258938	A-C	HET	INTRON
SBS	Chr11	20162799	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	22182750	A-G	HET	INTERGENIC
SBS	Chr12	2184955	C-A	HOMO	INTERGENIC
SBS	Chr12	14259175	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g24870
SBS	Chr12	15109166	C-G	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3596058	3596061	3	LOC_Os07g07250
Deletion	Chr7	5997897	5997898	1
Deletion	Chr2	6685194	6685205	11
Deletion	Chr11	11231304	11231313	9
Deletion	Chr11	11783108	11783112	4
Deletion	Chr5	12771369	12771370	1	LOC_Os05g22490
Deletion	Chr5	13233264	13233272	8
Deletion	Chr4	13973539	13973543	4	LOC_Os04g24370
Deletion	Chr6	14157376	14157378	2
Deletion	Chr12	15478507	15478508	1
Deletion	Chr2	19761365	19761374	9
Deletion	Chr3	20616001	20623000	7000	LOC_Os03g37210
Deletion	Chr10	21462307	21462311	4
Deletion	Chr3	24035241	24035245	4
Deletion	Chr6	26487975	26487981	6
Deletion	Chr3	30780361	30780372	11
Deletion	Chr3	34528001	34552000	24000	7
Deletion	Chr2	35110001	35407000	297000	49

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	31665249	31665249	1
Insertion	Chr6	23942449	23942449	1
Insertion	Chr3	3600803	3600814	12
Insertion	Chr3	1417094	1417095	2
Insertion	Chr11	25091462	25091462	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18523722	18531704	LOC_Os03g32380
Inversion	Chr3	18526707	18628496
Inversion	Chr3	18531711	18627406
Inversion	Chr3	19768959	20623460	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1118120	Chr9	134553
Translocation	Chr4	32449893	Chr1	19855063	LOC_Os04g54560

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