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| Mutant Information |
|---|
| Mutant Name | FN1052BCF2-34 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1052BCF2-34 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11297856 | A-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 15053894 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 15053895 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 30988247 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 11452422 | C-T | HOMO | INTRON | |
| SBS | Chr10 | 14638378 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 14347834 | G-A | HET | INTRON | |
| SBS | Chr11 | 15162194 | C-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 21832178 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 9380918 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 15040044 | C-T | HET | INTRON | |
| SBS | Chr12 | 19968426 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g33050 |
| SBS | Chr12 | 7262625 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 16238542 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 26332568 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 35846404 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 15944953 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 18999184 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 34381852 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g60460 |
| SBS | Chr3 | 957517 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 15980012 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 16799368 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 22850156 | T-A | HET | INTRON | |
| SBS | Chr4 | 29396239 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 31163999 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 31518026 | A-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 12392399 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 25077038 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 2682167 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 7726179 | T-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 9149814 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 12348789 | G-A | HET | INTRON | |
| SBS | Chr6 | 29131839 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 6455917 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 26206186 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 17623638 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 2494863 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 25116163 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g39680 |
| SBS | Chr8 | 814574 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 12536292 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 1404564 | T-C | HET | SYNONYMOUS_CODING |
Deletions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 9384441 | 9384443 | 2 | |
| Deletion | Chr1 | 18391398 | 18391406 | 8 | |
| Deletion | Chr6 | 20971837 | 20971851 | 14 | |
| Deletion | Chr2 | 30840670 | 30840671 | 1 |
No Insertion
No Inversion
No Translocation