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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1111141	G-A	HET	INTERGENIC
SBS	Chr1	12688697	A-G	HET	INTERGENIC
SBS	Chr1	20140044	A-G	HET	INTERGENIC
SBS	Chr1	27547511	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g48120
SBS	Chr1	4834399	T-C	HET	INTERGENIC
SBS	Chr1	7997199	G-A	HET	INTERGENIC
SBS	Chr10	11205380	T-C	HOMO	INTERGENIC
SBS	Chr10	833076	A-T	HOMO	INTERGENIC
SBS	Chr10	9402255	T-C	HOMO	INTERGENIC
SBS	Chr11	10917099	G-A	HET	INTERGENIC
SBS	Chr11	18271881	G-A	HOMO	INTERGENIC
SBS	Chr11	28244249	G-A	HET	INTERGENIC
SBS	Chr12	3299270	A-T	HET	INTRON
SBS	Chr2	17071868	G-A	HET	INTERGENIC
SBS	Chr2	3959736	T-A	HET	INTERGENIC
SBS	Chr2	471838	C-T	HET	INTERGENIC
SBS	Chr2	7526628	G-T	HET	INTERGENIC
SBS	Chr3	11141584	A-T	HET	INTERGENIC
SBS	Chr3	11141590	A-G	HET	INTERGENIC
SBS	Chr3	13560804	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23890
SBS	Chr3	15719379	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g27400
SBS	Chr4	11138123	G-A	HET	INTERGENIC
SBS	Chr4	13220792	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23220
SBS	Chr4	31524906	G-A	HET	INTRON
SBS	Chr5	10900052	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	23107547	G-T	HET	INTRON
SBS	Chr5	2510333	A-G	HET	INTERGENIC
SBS	Chr5	26732732	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	5019033	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g09040
SBS	Chr6	13042439	A-T	HOMO	INTRON
SBS	Chr6	28436391	G-C	HOMO	INTERGENIC
SBS	Chr7	27692345	G-T	HET	INTERGENIC
SBS	Chr8	4849027	A-G	HET	INTRON
SBS	Chr9	11668829	C-A	HET	INTERGENIC
SBS	Chr9	13035907	A-C	HET	INTERGENIC
SBS	Chr9	1359311	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	22159270	T-A	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1033233	1033243	10
Deletion	Chr11	5749095	5749107	12
Deletion	Chr4	6911001	7608000	697000	100
Deletion	Chr4	7611001	7914000	303000	50
Deletion	Chr2	7654706	7654721	15
Deletion	Chr4	7923001	7961000	38000	4
Deletion	Chr12	8812889	8812891	2
Deletion	Chr9	10789926	10789927	1
Deletion	Chr3	11516906	11516912	6
Deletion	Chr9	11579515	11579517	2
Deletion	Chr3	12414723	12414742	19	LOC_Os03g21730
Deletion	Chr10	13375970	13375974	4	LOC_Os10g25800
Deletion	Chr12	17398781	17398783	2
Deletion	Chr9	17796001	18055000	259000	34
Deletion	Chr12	18391906	18391912	6
Deletion	Chr9	22934414	22934417	3	LOC_Os09g40000
Deletion	Chr12	24005410	24005417	7
Deletion	Chr7	24162079	24162090	11
Deletion	Chr8	25193357	25193372	15	LOC_Os08g39800
Deletion	Chr4	26292821	26292822	1
Deletion	Chr3	26636448	26636472	24
Deletion	Chr7	27530476	27530483	7	LOC_Os07g46130

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6203404	6203404	1
Insertion	Chr12	17485054	17485057	4
Insertion	Chr2	30280530	30280539	10
Insertion	Chr3	15780243	15780244	2
Insertion	Chr7	23386232	23386233	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7855615	7913425	LOC_Os02g14410

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8900973	Chr3	11212891	2
Translocation	Chr9	8903476	Chr3	11212877	2
Translocation	Chr4	25513341	Chr3	16942858	LOC_Os03g29740
Translocation	Chr4	25516285	Chr3	16947180
Translocation	Chr7	27722576	Chr3	16942826	2
Translocation	Chr7	27722588	Chr3	16947218	LOC_Os07g46450

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