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Mutant Information

Mutant Name	FN1058-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1058-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2552537	A-G	HOMO	INTERGENIC
SBS	Chr1	23013105	A-T	HET	INTERGENIC
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	39063355	C-T	HOMO	INTERGENIC
SBS	Chr2	11727838	C-A	HET	INTRON
SBS	Chr2	15800349	C-T	HET	INTERGENIC
SBS	Chr2	26097231	C-T	HET	INTERGENIC
SBS	Chr2	35385192	A-G	HET	INTERGENIC
SBS	Chr3	6900466	G-A	HET	INTERGENIC
SBS	Chr3	18863352	C-T	HET	INTERGENIC
SBS	Chr4	16154	T-A	HET	INTERGENIC
SBS	Chr4	9703297	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17700
SBS	Chr4	16323011	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27600
SBS	Chr4	19542456	C-A	HET	INTERGENIC
SBS	Chr4	20760125	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g34270
SBS	Chr4	22861866	T-A	HOMO	INTERGENIC
SBS	Chr5	3973788	G-C	HET	INTERGENIC
SBS	Chr5	17872102	C-T	HET	INTRON
SBS	Chr6	17364850	G-A	HOMO	INTERGENIC
SBS	Chr6	22059152	T-C	HET	INTERGENIC
SBS	Chr7	4969099	T-A	HET	INTERGENIC
SBS	Chr7	5230408	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g09830
SBS	Chr7	8135698	C-T	HET	INTERGENIC
SBS	Chr7	18932209	C-T	HOMO	UTR_3_PRIME
SBS	Chr8	476592	G-T	HET	INTRON
SBS	Chr8	3269604	T-A	HOMO	INTERGENIC
SBS	Chr8	9098972	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g15050
SBS	Chr8	9098973	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g15050
SBS	Chr8	17525704	A-T	HET	INTERGENIC
SBS	Chr8	27746761	C-T	HOMO	INTERGENIC
SBS	Chr9	2208603	T-C	HOMO	INTRON
SBS	Chr9	3162117	G-A	HOMO	INTRON
SBS	Chr9	21069772	G-A	HET	INTERGENIC
SBS	Chr9	21154711	G-C	HET	INTERGENIC
SBS	Chr10	4484718	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g08300
SBS	Chr10	19854108	G-A	HET	UTR_3_PRIME
SBS	Chr11	1161992	G-A	HET	INTERGENIC
SBS	Chr11	15135673	C-T	HOMO	INTERGENIC
SBS	Chr11	22361247	G-A	HET	INTERGENIC
SBS	Chr11	25659838	G-A	HOMO	INTRON
SBS	Chr12	13705825	C-T	HET	INTRON
SBS	Chr12	19978893	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33060
SBS	Chr12	21365985	G-A	HET	INTERGENIC
SBS	Chr12	23514800	G-A	HET	INTERGENIC
SBS	Chr12	25974203	C-T	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	674055	674056	1	LOC_Os03g02100
Deletion	Chr1	727051	727063	12
Deletion	Chr3	2808753	2808758	5	LOC_Os03g05620
Deletion	Chr5	5463505	5463514	9
Deletion	Chr2	8593162	8593165	3
Deletion	Chr8	10860345	10860346	1
Deletion	Chr2	11727820	11727834	14
Deletion	Chr1	12011413	12011425	12	LOC_Os01g21500
Deletion	Chr2	13839713	13839717	4
Deletion	Chr7	14153146	14153149	3
Deletion	Chr10	14291849	14291854	5
Deletion	Chr10	14529003	14529005	2
Deletion	Chr7	18022398	18022399	1
Deletion	Chr11	21310503	21310506	3
Deletion	Chr4	23346072	23346079	7
Deletion	Chr1	25876923	25876925	2
Deletion	Chr1	25893666	25893672	6	LOC_Os01g45590
Deletion	Chr2	32081424	32081439	15	LOC_Os02g52420
Deletion	Chr2	33192443	33192444	1	LOC_Os02g54150
Deletion	Chr2	33923199	33923224	25
Deletion	Chr3	34607813	34608996	1183	LOC_Os03g60900
Deletion	Chr1	39610479	39610520	41

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	7964968	7964968	1
Insertion	Chr10	2738516	2738531	16
Insertion	Chr11	12653359	12653360	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	19807776	20965629	2

No Translocation

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