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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13985196	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	14134856	G-A	HET	INTERGENIC
SBS	Chr1	16702561	T-G	HET	INTERGENIC
SBS	Chr1	18722266	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34010
SBS	Chr1	21148845	T-C	HET	INTERGENIC
SBS	Chr1	2271608	G-T	HET	SPLICE_SITE_REGION
SBS	Chr1	24266153	C-T	HET	INTRON
SBS	Chr1	39495897	G-A	HOMO	INTRON
SBS	Chr10	975169	A-T	HET	INTERGENIC
SBS	Chr11	24752943	G-A	HET	INTERGENIC
SBS	Chr12	12632873	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	1368173	G-A	HOMO	INTERGENIC
SBS	Chr12	24088446	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	9188352	T-G	HOMO	INTERGENIC
SBS	Chr2	20192939	T-A	HET	INTERGENIC
SBS	Chr2	335363	A-G	HET	INTERGENIC
SBS	Chr2	33765168	T-C	HOMO	INTERGENIC
SBS	Chr3	17880026	C-T	HET	INTERGENIC
SBS	Chr3	35386450	T-G	HOMO	INTRON
SBS	Chr3	6271570	C-T	HET	INTERGENIC
SBS	Chr4	10670140	G-T	HET	INTRON
SBS	Chr5	17982400	C-T	HET	INTERGENIC
SBS	Chr5	23100668	T-G	HET	INTERGENIC
SBS	Chr5	26784993	T-A	HET	INTERGENIC
SBS	Chr5	26784994	G-A	HET	INTERGENIC
SBS	Chr6	12606826	G-C	HET	INTERGENIC
SBS	Chr6	23881947	C-G	HET	INTERGENIC
SBS	Chr6	7277619	G-A	HET	INTERGENIC
SBS	Chr6	7600379	G-T	HET	INTERGENIC
SBS	Chr7	15958490	G-A	HET	INTERGENIC
SBS	Chr7	18491250	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g31240
SBS	Chr7	3245957	G-T	HOMO	INTRON
SBS	Chr7	9731159	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g16590
SBS	Chr8	15534491	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25540
SBS	Chr8	16926185	T-A	HET	INTERGENIC
SBS	Chr9	11551751	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19300
SBS	Chr9	19234959	G-A	HET	INTERGENIC
SBS	Chr9	21427272	C-T	HET	INTERGENIC
SBS	Chr9	9172648	T-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1737241	1737248	7
Deletion	Chr9	1861642	1861654	12
Deletion	Chr7	2149402	2149403	1
Deletion	Chr11	3568460	3568485	25	LOC_Os11g07160
Deletion	Chr6	3811035	3811038	3
Deletion	Chr6	5029349	5029351	2
Deletion	Chr1	5844001	5907000	63000	8
Deletion	Chr5	5951381	5951394	13
Deletion	Chr7	5956597	5956601	4
Deletion	Chr10	6502968	6502969	1
Deletion	Chr7	6755146	6755147	1
Deletion	Chr8	6766584	6766585	1
Deletion	Chr6	8892556	8892567	11	LOC_Os06g15700
Deletion	Chr4	10248648	10248649	1
Deletion	Chr10	13796321	13796338	17
Deletion	Chr9	14829726	14829728	2
Deletion	Chr10	14874911	14874914	3	LOC_Os10g28580
Deletion	Chr4	18609607	18609612	5
Deletion	Chr12	19256137	19256146	9
Deletion	Chr12	20076156	20076206	50
Deletion	Chr4	20451855	20451857	2
Deletion	Chr12	22785107	22785108	1	LOC_Os12g37160
Deletion	Chr5	25013809	25013863	54	LOC_Os05g43060
Deletion	Chr12	25346895	25346896	1
Deletion	Chr1	26881449	26881450	1
Deletion	Chr7	27981173	27983823	2650	2
Deletion	Chr5	28722351	28722352	1	LOC_Os05g50120
Deletion	Chr4	29744231	29744232	1	LOC_Os04g49890

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	41613118	41613119	2
Insertion	Chr11	9774565	9774565	1
Insertion	Chr7	13222928	13222928	1

No Inversion

No Translocation

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