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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14232677	T-C	HET	INTRON
SBS	Chr1	18431715	A-T	HOMO	INTERGENIC
SBS	Chr1	21876616	G-A	HET	INTERGENIC
SBS	Chr1	26938522	T-C	HET	INTERGENIC
SBS	Chr1	42613290	C-T	HOMO	INTERGENIC
SBS	Chr2	14748595	T-C	HET	INTRON
SBS	Chr2	14748597	G-A	HET	INTRON
SBS	Chr2	21163763	T-C	HET	INTERGENIC
SBS	Chr3	3059637	C-T	HOMO	INTERGENIC
SBS	Chr3	6343935	T-A	HOMO	INTERGENIC
SBS	Chr3	6343936	C-G	HOMO	INTERGENIC
SBS	Chr3	14621758	G-A	HET	INTERGENIC
SBS	Chr3	20069904	A-G	HET	INTRON
SBS	Chr3	20197797	A-T	HOMO	INTERGENIC
SBS	Chr3	25577455	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	7623364	A-G	HOMO	INTERGENIC
SBS	Chr4	10560299	G-C	HOMO	INTRON
SBS	Chr4	11374684	A-G	HOMO	INTERGENIC
SBS	Chr4	25207260	T-C	HOMO	INTERGENIC
SBS	Chr4	26063569	G-A	HET	STOP_GAINED	LOC_Os04g43970
SBS	Chr4	34421257	G-T	HET	INTERGENIC
SBS	Chr5	4030962	G-A	HOMO	INTERGENIC
SBS	Chr6	24901335	T-A	HOMO	INTERGENIC
SBS	Chr6	28364582	G-A	HOMO	INTRON
SBS	Chr6	29176171	G-A	HOMO	INTRON
SBS	Chr6	29176172	G-A	HOMO	INTRON
SBS	Chr7	2271148	T-A	HOMO	INTRON
SBS	Chr7	4036735	T-C	HOMO	INTERGENIC
SBS	Chr7	15183111	G-A	HET	INTERGENIC
SBS	Chr7	27276651	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	2316747	C-T	HOMO	INTERGENIC
SBS	Chr8	12896327	G-A	HET	INTERGENIC
SBS	Chr8	15914040	G-A	HOMO	INTERGENIC
SBS	Chr8	15914041	T-A	HOMO	INTERGENIC
SBS	Chr9	248979	G-A	HET	INTERGENIC
SBS	Chr9	930831	G-A	HET	INTRON
SBS	Chr9	8306409	A-G	HET	INTERGENIC
SBS	Chr9	8962253	G-T	HET	INTERGENIC
SBS	Chr9	17172925	C-T	HOMO	INTERGENIC
SBS	Chr10	18514655	G-A	HOMO	INTERGENIC
SBS	Chr11	15039282	T-C	HET	INTERGENIC
SBS	Chr11	24871543	G-A	HET	SYNONYMOUS_CODING

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	798146	798149	3
Deletion	Chr9	3642330	3642332	2
Deletion	Chr3	10419939	10419948	9
Deletion	Chr4	11412168	11412193	25
Deletion	Chr12	14475484	14475487	3	LOC_Os12g25190
Deletion	Chr10	14532979	14532995	16	LOC_Os10g28020
Deletion	Chr11	15485498	15485512	14
Deletion	Chr2	15691773	15692691	918
Deletion	Chr11	17345501	17345502	1
Deletion	Chr3	17493184	17493185	1
Deletion	Chr5	17758683	17758685	2	LOC_Os05g30660
Deletion	Chr10	19408245	19408248	3	LOC_Os10g36310
Deletion	Chr8	22545027	22545028	1
Deletion	Chr3	22720599	22720601	2
Deletion	Chr11	24928297	24928307	10
Deletion	Chr4	25121652	25121681	29
Deletion	Chr1	42952499	42952507	8	LOC_Os01g74146

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	3611628	3611646	19
Insertion	Chr6	29176134	29176150	17
Insertion	Chr7	12793853	12793855	3

No Inversion

No Translocation

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