Search Nipponbare

Mutant Information

Mutant Name	FN1065-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1065-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	103919	C-T	HET	INTERGENIC
SBS	Chr1	20173167	C-T	HOMO	INTRON
SBS	Chr1	38517452	G-A	HET	INTERGENIC
SBS	Chr10	21470423	G-T	HOMO	INTRON
SBS	Chr11	19580986	A-T	HOMO	INTRON
SBS	Chr11	22240200	T-C	HOMO	INTERGENIC
SBS	Chr12	1773162	C-T	HET	UTR_3_PRIME
SBS	Chr12	18016459	T-C	HET	INTERGENIC
SBS	Chr12	18317899	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	10316559	T-C	HET	INTERGENIC
SBS	Chr2	8132699	G-A	HET	INTERGENIC
SBS	Chr2	85362	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	10023228	T-G	HOMO	INTERGENIC
SBS	Chr3	21775543	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39210
SBS	Chr3	725730	G-A	HET	INTERGENIC
SBS	Chr3	9744946	A-T	HET	SYNONYMOUS_CODING
SBS	Chr4	27689346	A-G	HET	INTERGENIC
SBS	Chr4	3114322	T-A	HET	INTERGENIC
SBS	Chr5	17127002	A-G	HET	INTERGENIC
SBS	Chr5	27726670	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g48360
SBS	Chr5	28531703	C-A	HET	INTERGENIC
SBS	Chr5	7927721	C-T	HET	INTRON
SBS	Chr5	8611978	G-A	HET	INTERGENIC
SBS	Chr6	11350818	C-T	HOMO	INTERGENIC
SBS	Chr6	13134429	G-A	HOMO	INTERGENIC
SBS	Chr6	24298495	A-G	HET	INTRON
SBS	Chr6	24606904	T-A	HOMO	INTERGENIC
SBS	Chr6	26502095	C-T	HOMO	INTERGENIC
SBS	Chr6	28107316	C-T	HET	INTERGENIC
SBS	Chr7	10832288	C-T	HET	INTERGENIC
SBS	Chr7	14002345	G-A	HET	INTERGENIC
SBS	Chr7	14272145	T-C	HET	INTERGENIC
SBS	Chr7	22850034	C-T	HET	INTERGENIC
SBS	Chr7	23501897	A-G	HET	INTERGENIC
SBS	Chr7	26900687	G-T	HET	INTERGENIC
SBS	Chr7	5905056	A-C	HET	INTERGENIC
SBS	Chr7	5905057	C-A	HET	INTERGENIC
SBS	Chr7	9144649	A-T	HET	SYNONYMOUS_CODING
SBS	Chr8	11099052	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	12733247	C-A	HOMO	INTERGENIC
SBS	Chr8	26600152	G-A	HOMO	INTERGENIC
SBS	Chr8	4872092	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g08460
SBS	Chr8	7311360	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12390
SBS	Chr9	10886797	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	12687142	A-G	HET	INTERGENIC
SBS	Chr9	17978389	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29560

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	7590001	8247000	657000	114
Deletion	Chr11	8444609	8444611	2
Deletion	Chr11	10547129	10547134	5
Deletion	Chr11	11618001	11618033	32
Deletion	Chr11	12013294	12013295	1
Deletion	Chr10	17497114	17497131	17
Deletion	Chr6	17730275	17730280	5
Deletion	Chr11	18693261	18693264	3
Deletion	Chr12	19507001	20159000	652000	93
Deletion	Chr10	20153841	20153848	7
Deletion	Chr12	20219001	20428000	209000	40
Deletion	Chr7	23880312	23880353	41
Deletion	Chr12	23936322	23936330	8	LOC_Os12g38930
Deletion	Chr2	29470256	29470262	6
Deletion	Chr2	31600535	31600616	81	LOC_Os02g51590
Deletion	Chr2	31807418	31807435	17	LOC_Os02g51930
Deletion	Chr2	35681272	35681279	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1871798	1871798	1
Insertion	Chr12	11625088	11625090	3
Insertion	Chr3	10674720	10674723	4
Insertion	Chr3	7388158	7388159	2
Insertion	Chr6	28300445	28300448	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21614253	21857080	LOC_Os09g37910
Inversion	Chr9	21857094	22707294	LOC_Os09g37910

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2594411	Chr1	17033505
Translocation	Chr8	4022945	Chr6	6194036
Translocation	Chr8	4023195	Chr7	7588570
Translocation	Chr7	7588571	Chr6	6194036
Translocation	Chr7	7589227	Chr6	6194029
Translocation	Chr9	21857094	Chr3	9468158	LOC_Os09g37910
Translocation	Chr9	22707294	Chr3	9468443

Main menu

You are here

Search Nipponbare