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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5127223	G-A	HOMO	INTERGENIC
SBS	Chr1	921844	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	12206886	T-C	HOMO	INTERGENIC
SBS	Chr10	9385786	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18480
SBS	Chr11	11871483	C-A	HET	INTRON
SBS	Chr11	14254430	G-A	HET	INTERGENIC
SBS	Chr12	17433316	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29360
SBS	Chr12	8233157	C-A	HET	INTERGENIC
SBS	Chr2	28377111	T-C	HET	INTERGENIC
SBS	Chr2	30277452	G-T	HET	INTRON
SBS	Chr2	30594249	A-C	HET	INTRON
SBS	Chr2	32409771	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52970
SBS	Chr3	20852952	G-A	HET	INTERGENIC
SBS	Chr3	28705585	G-A	HOMO	INTERGENIC
SBS	Chr3	3546013	C-T	HET	INTRON
SBS	Chr4	12405400	T-C	HET	INTERGENIC
SBS	Chr4	16226138	T-C	HET	INTERGENIC
SBS	Chr4	34563303	T-A	HOMO	INTERGENIC
SBS	Chr5	25289523	A-G	HOMO	INTERGENIC
SBS	Chr6	27929428	T-A	HET	INTERGENIC
SBS	Chr6	6176885	C-A	HET	INTERGENIC
SBS	Chr6	6516659	A-C	HET	UTR_5_PRIME
SBS	Chr7	16854456	C-T	HET	INTERGENIC
SBS	Chr7	19167801	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g32250
SBS	Chr7	6894587	C-T	HET	INTERGENIC
SBS	Chr7	9888677	A-T	HET	INTERGENIC
SBS	Chr8	19254022	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31150
SBS	Chr9	13023124	A-T	HET	UTR_3_PRIME
SBS	Chr9	13180443	C-T	HET	INTERGENIC
SBS	Chr9	4317486	C-G	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	7582134	7582137	3
Deletion	Chr1	8329412	8329413	1
Deletion	Chr5	8443589	8443590	1
Deletion	Chr5	8686860	8686866	6
Deletion	Chr2	9039366	9039368	2
Deletion	Chr6	11141756	11141761	5
Deletion	Chr9	11843884	11843886	2	LOC_Os09g19790
Deletion	Chr2	12661183	12661315	132
Deletion	Chr11	14130080	14130105	25
Deletion	Chr6	15146569	15146577	8
Deletion	Chr6	16544658	16548907	4249	LOC_Os06g29030
Deletion	Chr6	16715367	16715370	3	LOC_Os06g29260
Deletion	Chr3	16895990	16896009	19
Deletion	Chr9	18458778	18458788	10
Deletion	Chr7	18518651	18518657	6
Deletion	Chr8	19254016	19254017	1	LOC_Os08g31150
Deletion	Chr1	26688232	26688233	1	LOC_Os01g46800
Deletion	Chr6	27196718	27196719	1
Deletion	Chr2	28162001	28200000	38000	3
Deletion	Chr3	29298489	29298500	11
Deletion	Chr1	30131824	30131830	6
Deletion	Chr2	34946303	34946313	10
Deletion	Chr2	34958483	34958484	1	LOC_Os02g57090
Deletion	Chr2	35897689	35897693	4	LOC_Os02g58760
Deletion	Chr1	37144851	37144854	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	14804756	14804756	1
Insertion	Chr11	22223380	22223383	4
Insertion	Chr3	16708020	16708021	2
Insertion	Chr3	8980430	8980430	1
Insertion	Chr4	2305618	2305618	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3330019	7857443
Inversion	Chr2	12661184	28199842	LOC_Os02g46240
Inversion	Chr12	15175975	16534897
Inversion	Chr8	20430809	20879680	LOC_Os08g32940

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7596518	Chr7	13502633
Translocation	Chr10	18419178	Chr6	7203363	LOC_Os06g13120
Translocation	Chr10	18419181	Chr6	7191921
Translocation	Chr7	20641689	Chr2	28399330	LOC_Os07g34410

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