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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12560140	T-A	HET	INTERGENIC
SBS	Chr1	14287496	G-A	HET	INTERGENIC
SBS	Chr1	37707322	A-T	HET	INTERGENIC
SBS	Chr1	43140227	A-G	HOMO	INTERGENIC
SBS	Chr10	18204901	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g34110
SBS	Chr10	18204905	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g34110
SBS	Chr10	9952050	C-A	HET	INTERGENIC
SBS	Chr11	10958718	C-A	HET	INTERGENIC
SBS	Chr11	14312464	G-A	HOMO	UTR_3_PRIME
SBS	Chr11	26134438	T-G	HOMO	INTERGENIC
SBS	Chr2	17780860	C-A	HET	INTERGENIC
SBS	Chr2	23354877	G-A	HET	STOP_GAINED	LOC_Os02g38640
SBS	Chr2	28224672	A-G	HET	INTERGENIC
SBS	Chr2	2890205	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05850
SBS	Chr2	3794548	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07350
SBS	Chr2	9680912	G-T	HET	INTERGENIC
SBS	Chr3	23698880	G-A	HET	INTRON
SBS	Chr3	25676435	T-C	HOMO	INTERGENIC
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	25547767	C-T	HET	INTRON
SBS	Chr4	26552656	T-A	HOMO	INTERGENIC
SBS	Chr4	28949187	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	17311918	C-A	HOMO	INTERGENIC
SBS	Chr5	25836778	G-A	HET	INTERGENIC
SBS	Chr6	24356733	G-T	HET	INTERGENIC
SBS	Chr6	617408	G-T	HET	INTRON
SBS	Chr8	15781803	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g25940
SBS	Chr8	23415571	G-A	HET	INTERGENIC
SBS	Chr9	17643115	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29050
SBS	Chr9	17643116	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g29050
SBS	Chr9	3377702	A-T	HOMO	INTERGENIC
SBS	Chr9	884233	T-A	HOMO	INTRON
SBS	Chr9	9588977	T-C	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	69026	69030	4
Deletion	Chr3	2959001	3075000	116000	23
Deletion	Chr11	3234425	3235579	1154	LOC_Os11g06650
Deletion	Chr9	3384743	3387125	2382
Deletion	Chr1	6105112	6105122	10
Deletion	Chr5	7886001	7948000	62000	7
Deletion	Chr2	11078544	11078555	11
Deletion	Chr2	14474356	14474361	5
Deletion	Chr3	16775723	16775734	11
Deletion	Chr9	20442720	20442722	2
Deletion	Chr9	22065108	22065117	9	LOC_Os09g38340
Deletion	Chr1	23001679	23001681	2
Deletion	Chr8	27945262	27945288	26
Deletion	Chr6	30131287	30131317	30	LOC_Os06g49800
Deletion	Chr1	34768511	34768512	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19039861	19039862	2
Insertion	Chr4	11611895	11611895	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr10	17300060	17643981
Inversion	Chr10	19217668	19455569
Inversion	Chr3	23131878	24065958
Inversion	Chr3	23131899	24065963

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3387120	Chr5	8123317
Translocation	Chr9	4466808	Chr3	22612598	LOC_Os09g08560
Translocation	Chr9	4468324	Chr3	22612593	LOC_Os09g08570
Translocation	Chr10	13428256	Chr8	19392239	2
Translocation	Chr7	25340201	Chr4	15518886

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