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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14158371	C-T	HET	INTERGENIC
SBS	Chr1	41746721	G-A	HET	INTERGENIC
SBS	Chr1	495848	A-G	HET	INTERGENIC
SBS	Chr1	9947928	C-A	HET	UTR_5_PRIME
SBS	Chr10	11138892	G-A	HET	INTERGENIC
SBS	Chr10	4287227	A-G	HET	INTERGENIC
SBS	Chr11	12973844	C-A	HET	INTERGENIC
SBS	Chr11	21084573	C-G	HET	INTERGENIC
SBS	Chr11	25168808	G-A	HET	INTERGENIC
SBS	Chr11	5578972	C-A	HET	INTERGENIC
SBS	Chr12	15613360	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	18437345	A-T	HET	SYNONYMOUS_CODING
SBS	Chr12	4304871	C-T	HET	INTERGENIC
SBS	Chr12	4828594	A-T	HOMO	INTERGENIC
SBS	Chr12	8187803	G-A	HOMO	INTERGENIC
SBS	Chr12	9630704	C-T	HET	INTERGENIC
SBS	Chr2	8443748	C-T	HET	INTERGENIC
SBS	Chr3	14140204	G-A	HET	INTERGENIC
SBS	Chr3	16241562	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28230
SBS	Chr3	23965818	A-G	HET	INTERGENIC
SBS	Chr3	27626922	A-G	HET	INTERGENIC
SBS	Chr4	15515901	G-A	HET	INTRON
SBS	Chr4	16182014	A-C	HET	INTERGENIC
SBS	Chr4	8627164	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g15890
SBS	Chr5	1804760	C-G	HET	INTRON
SBS	Chr5	5159719	A-G	HET	INTRON
SBS	Chr6	24849246	C-T	HET	INTERGENIC
SBS	Chr7	14435583	T-A	HET	SYNONYMOUS_CODING
SBS	Chr7	16697957	C-A	HOMO	STOP_GAINED	LOC_Os07g28530
SBS	Chr7	7844806	C-T	HOMO	INTERGENIC
SBS	Chr7	9804660	G-A	HOMO	INTERGENIC
SBS	Chr8	9650377	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g15870

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1278001	1315000	37000	6
Deletion	Chr10	2233534	2233565	31
Deletion	Chr11	2744952	2744953	1
Deletion	Chr6	4790293	4790296	3
Deletion	Chr4	5671722	5671723	1
Deletion	Chr11	6067463	6067467	4
Deletion	Chr11	7019074	7019075	1
Deletion	Chr1	7853347	7853357	10
Deletion	Chr12	8022081	8022098	17
Deletion	Chr12	10779629	10779634	5
Deletion	Chr4	11551981	11551982	1
Deletion	Chr5	12850211	12850212	1
Deletion	Chr5	13769197	13769207	10
Deletion	Chr4	14875074	14875076	2
Deletion	Chr12	16933899	16933908	9
Deletion	Chr4	16958751	16958765	14
Deletion	Chr4	17102396	17102397	1
Deletion	Chr2	18069617	18069665	48	LOC_Os02g30330
Deletion	Chr8	20892862	20892898	36
Deletion	Chr4	22441702	22441705	3
Deletion	Chr3	23228421	23228422	1	LOC_Os03g41830
Deletion	Chr5	23649560	23649573	13
Deletion	Chr11	27696316	27696318	2
Deletion	Chr3	30498804	30498806	2
Deletion	Chr3	33928073	33928082	9
Deletion	Chr1	35522096	35522097	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	17838567	17838570	4
Insertion	Chr11	26129615	26129616	2
Insertion	Chr11	2800185	2800188	4
Insertion	Chr5	10837772	10837773	2
Insertion	Chr5	28034317	28034317	1
Insertion	Chr6	27094509	27094510	2
Insertion	Chr6	7629182	7629183	2
Insertion	Chr9	15198129	15198132	4

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	6139703	Chr1	17190459	LOC_Os04g11230
Translocation	Chr11	13215626	Chr3	12026781	LOC_Os03g21120
Translocation	Chr11	13217136	Chr3	12026830	LOC_Os03g21120
Translocation	Chr10	17375331	Chr7	4074187	2
Translocation	Chr10	17375336	Chr7	4074198	2

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