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Mutant Information

Mutant Name	FN1070-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1070-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10627878	G-A	HOMO	INTERGENIC
SBS	Chr1	13753805	G-A	HET	STOP_GAINED	LOC_Os01g24400
SBS	Chr1	37659530	G-A	HET	INTRON
SBS	Chr11	10280664	G-A	HET	INTRON
SBS	Chr11	10667584	G-A	HET	STOP_GAINED	LOC_Os11g18790
SBS	Chr2	1371452	C-T	HET	INTRON
SBS	Chr2	2086172	C-T	HOMO	INTERGENIC
SBS	Chr3	19696004	C-T	HET	INTRON
SBS	Chr3	33678355	T-C	HET	INTERGENIC
SBS	Chr4	11267763	T-A	HOMO	UTR_5_PRIME
SBS	Chr4	14241939	C-T	HET	INTERGENIC
SBS	Chr4	17138507	C-T	HET	INTRON
SBS	Chr4	19199805	T-C	HOMO	INTERGENIC
SBS	Chr7	20795927	C-G	HOMO	INTERGENIC
SBS	Chr7	2758816	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05740
SBS	Chr8	3736465	A-G	HOMO	UTR_3_PRIME
SBS	Chr8	6824264	G-A	HET	INTERGENIC
SBS	Chr9	17187327	T-C	HET	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1608367	1608371	4
Deletion	Chr10	7333950	7333954	4
Deletion	Chr4	8319827	8319854	27
Deletion	Chr7	8344606	8354691	10085	3
Deletion	Chr6	10371124	10371125	1
Deletion	Chr10	14183983	14184006	23
Deletion	Chr1	20634672	20634676	4
Deletion	Chr5	20755722	20755729	7
Deletion	Chr7	20937296	20937300	4
Deletion	Chr8	21535157	21535163	6
Deletion	Chr12	21715201	21715844	643
Deletion	Chr8	23146456	23146457	1
Deletion	Chr3	23404261	23404472	211
Deletion	Chr8	24764223	24764225	2
Deletion	Chr3	24958341	24958345	4
Deletion	Chr12	26167985	26167986	1
Deletion	Chr4	28525213	28525223	10	LOC_Os04g47970
Deletion	Chr4	35047602	35047607	5

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39916646	39916649	4
Insertion	Chr1	40469277	40469278	2
Insertion	Chr6	10144849	10144849	1
Insertion	Chr6	22140214	22140215	2
Insertion	Chr7	23524219	23524220	2
Insertion	Chr8	27747221	27747225	5

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4312807	Chr4	25107829
Translocation	Chr12	21715204	Chr1	2069875
Translocation	Chr12	21715842	Chr1	2069871