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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10355095	G-A	HET	INTERGENIC
SBS	Chr1	10359036	C-T	HET	INTERGENIC
SBS	Chr1	17142172	C-T	HET	INTERGENIC
SBS	Chr1	22213372	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39420
SBS	Chr1	25031456	A-T	HET	INTRON
SBS	Chr1	39820181	G-A	HET	INTERGENIC
SBS	Chr10	18314298	C-T	HET	UTR_5_PRIME
SBS	Chr10	21942248	G-A	HOMO	INTERGENIC
SBS	Chr11	20650485	A-G	HET	INTERGENIC
SBS	Chr12	2183457	C-T	HOMO	INTERGENIC
SBS	Chr2	14785044	G-A	HET	INTERGENIC
SBS	Chr2	14806294	T-G	HET	INTERGENIC
SBS	Chr2	4457439	G-T	HOMO	INTRON
SBS	Chr2	4457440	C-T	HOMO	INTRON
SBS	Chr2	4796654	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	14130071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24800
SBS	Chr4	12734836	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	11301920	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g19450
SBS	Chr5	17795727	A-T	HET	INTERGENIC
SBS	Chr5	21634112	A-G	HET	INTERGENIC
SBS	Chr5	25645264	C-A	HET	INTRON
SBS	Chr6	12938829	C-T	HET	INTERGENIC
SBS	Chr6	26845659	G-A	HET	INTERGENIC
SBS	Chr6	776249	T-A	HET	INTERGENIC
SBS	Chr7	10884896	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18370
SBS	Chr8	9388425	A-T	HET	INTERGENIC
SBS	Chr9	6969945	A-C	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	762580	762581	1
Deletion	Chr8	3663666	3663701	35
Deletion	Chr10	3998645	3998646	1
Deletion	Chr7	9116781	9116796	15
Deletion	Chr8	9538319	9538322	3
Deletion	Chr8	10237567	10237573	6
Deletion	Chr1	10324828	10324839	11
Deletion	Chr2	12462906	12462907	1	LOC_Os02g21030
Deletion	Chr1	12725992	12725994	2
Deletion	Chr7	15774815	15774816	1
Deletion	Chr10	16886358	16886410	52	LOC_Os10g32140
Deletion	Chr9	17711843	17711845	2
Deletion	Chr12	17798228	17798256	28
Deletion	Chr10	18503388	18503389	1
Deletion	Chr8	21787533	21787548	15
Deletion	Chr7	27929103	27954612	25509	7
Deletion	Chr4	28225372	28225378	6
Deletion	Chr4	28474620	28474624	4
Deletion	Chr1	36014725	36014726	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11758370	11758381	12	LOC_Os10g22630
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr3	11087557	11087558	2
Insertion	Chr3	16289691	16289692	2
Insertion	Chr4	20207266	20207267	2
Insertion	Chr4	31443242	31443256	15	LOC_Os04g52810
Insertion	Chr7	26321214	26321218	5	LOC_Os07g44040
Insertion	Chr7	28125524	28125524	1
Insertion	Chr9	14947077	14947079	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr2	6421750	6701658
Inversion	Chr2	6421773	6701684
Inversion	Chr3	24328608	24495339
Inversion	Chr3	24328619	24495338

No Translocation

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