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| Mutant Information |
|---|
| Mutant Name | FN1074-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1074-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 6
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15895551 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 11603592 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g19910 |
| SBS | Chr12 | 2636983 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 3856161 | T-C | HET | INTRON | |
| SBS | Chr2 | 19215909 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 11202939 | G-A | HET | INTRON |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2062290 | 2070856 | 8566 | LOC_Os10g04380 |
| Deletion | Chr5 | 5893516 | 5925957 | 32441 | 5 |
| Deletion | Chr7 | 14839432 | 14839435 | 3 | LOC_Os07g25840 |
| Deletion | Chr2 | 16628476 | 16628480 | 4 | LOC_Os02g28074 |
| Deletion | Chr2 | 16737001 | 16788000 | 51000 | 9 |
| Deletion | Chr3 | 29262459 | 29262476 | 17 | LOC_Os03g51140 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 28175908 | 28175911 | 4 | |
| Insertion | Chr6 | 26153097 | 26153099 | 3 | |
| Insertion | Chr7 | 11088367 | 11088370 | 4 | |
| Insertion | Chr8 | 16622730 | 16622731 | 2 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 1631173 | Chr11 | 10418280 | LOC_Os12g03940 |
| Translocation | Chr6 | 3033843 | Chr3 | 8228151 | LOC_Os03g15060 |
| Translocation | Chr12 | 11272986 | Chr11 | 9861397 | LOC_Os12g19381 |
| Translocation | Chr7 | 28543170 | Chr2 | 33256982 | LOC_Os02g54254 |