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| Mutant Information |
|---|
| Mutant Name | FN1079-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1079-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17343807 | A-C | HET | INTRON | |
| SBS | Chr1 | 39918015 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 5548088 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 6411394 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 17953602 | T-C | HET | INTRON | |
| SBS | Chr10 | 5563328 | C-A | HOMO | INTRON | |
| SBS | Chr11 | 18833588 | A-G | HOMO | INTRON | |
| SBS | Chr2 | 31035612 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 31805352 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 26239421 | C-T | HOMO | UTR_5_PRIME | |
| SBS | Chr3 | 34521172 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 27054587 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 662509 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 8859794 | A-C | HET | INTERGENIC | |
| SBS | Chr5 | 26162795 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 4330376 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g08010 |
| SBS | Chr7 | 1832126 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 25713176 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 25993639 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 1420916 | T-G | HET | INTRON | |
| SBS | Chr8 | 18495401 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 20450604 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 13909886 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 16839150 | C-T | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 646730 | 646740 | 10 | |
| Deletion | Chr4 | 1615152 | 1615170 | 18 | |
| Deletion | Chr8 | 2038961 | 2046746 | 7785 | LOC_Os08g04200 |
| Deletion | Chr5 | 3624283 | 3624339 | 56 | |
| Deletion | Chr9 | 4845067 | 4845068 | 1 | |
| Deletion | Chr2 | 6943053 | 6943055 | 2 | |
| Deletion | Chr1 | 10235676 | 10235679 | 3 | LOC_Os01g18250 |
| Deletion | Chr2 | 12190353 | 12190371 | 18 | |
| Deletion | Chr9 | 12908786 | 12908796 | 10 | |
| Deletion | Chr3 | 13998872 | 13998876 | 4 | |
| Deletion | Chr7 | 24655058 | 24655074 | 16 | LOC_Os07g41180 |
| Deletion | Chr1 | 26274453 | 26274457 | 4 | |
| Deletion | Chr7 | 27801052 | 27801097 | 45 | |
| Deletion | Chr11 | 28642701 | 28642703 | 2 | LOC_Os11g47445 |
| Deletion | Chr6 | 30836336 | 30836340 | 4 | |
| Deletion | Chr6 | 31116177 | 31116191 | 14 | |
| Deletion | Chr1 | 39946487 | 39946488 | 1 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 1276514 | 1276514 | 1 | |
| Insertion | Chr4 | 3630733 | 3630735 | 3 | |
| Insertion | Chr6 | 5105307 | 5105308 | 2 | |
| Insertion | Chr7 | 22934910 | 22934911 | 2 | |
| Insertion | Chr8 | 19739015 | 19739050 | 36 | LOC_Os08g31830 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 3237349 | 3776900 | LOC_Os12g06670 |
| Inversion | Chr9 | 12775624 | 14026701 | LOC_Os09g23610 |
| Inversion | Chr7 | 19044306 | 19683348 | LOC_Os07g32920 |
| Inversion | Chr7 | 19044326 | 19683369 | LOC_Os07g32920 |
No Translocation