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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10375580	G-C	HET	INTERGENIC
SBS	Chr1	19416137	C-A	HET	INTRON
SBS	Chr1	20097597	A-T	HET	STOP_GAINED	LOC_Os01g36260
SBS	Chr1	26368226	G-A	HET	INTRON
SBS	Chr1	29338579	G-A	HET	INTERGENIC
SBS	Chr1	31733284	G-C	HOMO	INTERGENIC
SBS	Chr1	35223960	G-A	HET	INTERGENIC
SBS	Chr10	20448428	T-C	HET	INTERGENIC
SBS	Chr10	9568695	T-A	HET	INTRON
SBS	Chr11	18065542	G-C	HET	INTRON
SBS	Chr11	22003919	C-T	HOMO	INTRON
SBS	Chr2	14191091	C-A	HET	INTERGENIC
SBS	Chr2	19736330	C-T	HOMO	INTERGENIC
SBS	Chr2	26557081	A-G	HOMO	INTERGENIC
SBS	Chr2	28650018	T-C	HOMO	INTERGENIC
SBS	Chr2	35087950	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57270
SBS	Chr2	35087952	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57270
SBS	Chr2	35087953	A-T	HET	SYNONYMOUS_CODING
SBS	Chr2	35605146	G-A	HET	INTERGENIC
SBS	Chr3	28600643	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g50150
SBS	Chr3	36361199	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g64330
SBS	Chr3	8444369	C-T	HET	INTERGENIC
SBS	Chr4	6133809	T-C	HOMO	INTERGENIC
SBS	Chr5	26640551	A-G	HET	INTERGENIC
SBS	Chr6	25302095	C-G	HET	INTERGENIC
SBS	Chr6	3385785	A-T	HOMO	INTRON
SBS	Chr6	5584285	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g10690
SBS	Chr9	17648230	C-A	HOMO	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1509712	1509722	10	LOC_Os12g03730
Deletion	Chr4	2072024	2072031	7
Deletion	Chr11	3192600	3192601	1
Deletion	Chr3	5868742	5868745	3	LOC_Os03g11400
Deletion	Chr9	7250584	7250588	4
Deletion	Chr1	9709851	9709856	5
Deletion	Chr7	11069124	11069128	4	LOC_Os07g18720
Deletion	Chr5	11760016	11760018	2
Deletion	Chr5	12014678	12014683	5
Deletion	Chr3	12094166	12094167	1
Deletion	Chr5	13248316	13248319	3	LOC_Os05g23210
Deletion	Chr9	14320714	14320715	1
Deletion	Chr10	15245889	15245892	3	LOC_Os10g29310
Deletion	Chr8	20644531	20644534	3
Deletion	Chr5	26055683	26055696	13	LOC_Os05g44810
Deletion	Chr4	28308773	28309731	958	LOC_Os04g47710
Deletion	Chr1	31595222	31595227	5
Deletion	Chr3	31893023	31893030	7
Deletion	Chr4	32819115	32819121	6	LOC_Os04g55200
Deletion	Chr2	35081596	35081617	21

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19595026	19595027	2
Insertion	Chr11	22614828	22614829	2
Insertion	Chr11	7829346	7829347	2
Insertion	Chr12	2620913	2620913	1
Insertion	Chr3	33978737	33978738	2
Insertion	Chr4	10927770	10927770	1
Insertion	Chr8	19502969	19502971	3
Insertion	Chr8	21075346	21075347	2
Insertion	Chr8	23775150	23775150	1	LOC_Os08g37540

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8691574	9772153
Inversion	Chr2	9397718	9772151

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	34394768	Chr2	31696450	2

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