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Mutant Information |
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Mutant Name | FN1082-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1082-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 28
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 10375580 | G-C | HET | INTERGENIC | |
SBS | Chr1 | 19416137 | C-A | HET | INTRON | |
SBS | Chr1 | 20097597 | A-T | HET | STOP_GAINED | LOC_Os01g36260 |
SBS | Chr1 | 26368226 | G-A | HET | INTRON | |
SBS | Chr1 | 29338579 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 31733284 | G-C | HOMO | INTERGENIC | |
SBS | Chr1 | 35223960 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 14191091 | C-A | HET | INTERGENIC | |
SBS | Chr2 | 19736330 | C-T | HOMO | INTERGENIC | |
SBS | Chr2 | 26557081 | A-G | HOMO | INTERGENIC | |
SBS | Chr2 | 28650018 | T-C | HOMO | INTERGENIC | |
SBS | Chr2 | 35087950 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g57270 |
SBS | Chr2 | 35087952 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g57270 |
SBS | Chr2 | 35087953 | A-T | HET | SYNONYMOUS_CODING | |
SBS | Chr2 | 35605146 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 8444369 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 28600643 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g50150 |
SBS | Chr3 | 36361199 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g64330 |
SBS | Chr4 | 6133809 | T-C | HOMO | INTERGENIC | |
SBS | Chr5 | 26640551 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 3385785 | A-T | HOMO | INTRON | |
SBS | Chr6 | 5584285 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g10690 |
SBS | Chr6 | 25302095 | C-G | HET | INTERGENIC | |
SBS | Chr9 | 17648230 | C-A | HOMO | INTRON | |
SBS | Chr10 | 9568695 | T-A | HET | INTRON | |
SBS | Chr10 | 20448428 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 18065542 | G-C | HET | INTRON | |
SBS | Chr11 | 22003919 | C-T | HOMO | INTRON |
Deletions: 20
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 1509712 | 1509722 | 10 | LOC_Os12g03730 |
Deletion | Chr4 | 2072024 | 2072031 | 7 | |
Deletion | Chr11 | 3192600 | 3192601 | 1 | |
Deletion | Chr3 | 5868742 | 5868745 | 3 | LOC_Os03g11400 |
Deletion | Chr9 | 7250584 | 7250588 | 4 | |
Deletion | Chr1 | 9709851 | 9709856 | 5 | |
Deletion | Chr7 | 11069124 | 11069128 | 4 | LOC_Os07g18720 |
Deletion | Chr5 | 11760016 | 11760018 | 2 | |
Deletion | Chr5 | 12014678 | 12014683 | 5 | |
Deletion | Chr3 | 12094166 | 12094167 | 1 | |
Deletion | Chr5 | 13248316 | 13248319 | 3 | LOC_Os05g23210 |
Deletion | Chr9 | 14320714 | 14320715 | 1 | |
Deletion | Chr10 | 15245889 | 15245892 | 3 | LOC_Os10g29310 |
Deletion | Chr8 | 20644531 | 20644534 | 3 | |
Deletion | Chr5 | 26055683 | 26055696 | 13 | LOC_Os05g44810 |
Deletion | Chr4 | 28308773 | 28309731 | 958 | LOC_Os04g47710 |
Deletion | Chr1 | 31595222 | 31595227 | 5 | |
Deletion | Chr3 | 31893023 | 31893030 | 7 | |
Deletion | Chr4 | 32819115 | 32819121 | 6 | LOC_Os04g55200 |
Deletion | Chr2 | 35081596 | 35081617 | 21 |
Insertions: 9
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr8 | 23775150 | 23775150 | 1 | LOC_Os08g37540 |
Insertion | Chr3 | 33978737 | 33978738 | 2 | |
Insertion | Chr4 | 10927770 | 10927770 | 1 | |
Insertion | Chr8 | 19502969 | 19502971 | 3 | |
Insertion | Chr8 | 21075346 | 21075347 | 2 | |
Insertion | Chr11 | 7829346 | 7829347 | 2 | |
Insertion | Chr11 | 19595026 | 19595027 | 2 | |
Insertion | Chr11 | 22614828 | 22614829 | 2 | |
Insertion | Chr12 | 2620913 | 2620913 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 8691574 | 9772153 | |
Inversion | Chr2 | 9397718 | 9772151 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr3 | 34394768 | Chr2 | 31696450 | 2 |