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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10124854	T-A	HOMO	INTERGENIC
SBS	Chr1	10618104	T-G	HOMO	INTERGENIC
SBS	Chr1	18517171	T-A	HOMO	INTERGENIC
SBS	Chr1	25557358	C-T	HOMO	INTRON
SBS	Chr1	32335254	T-C	HET	INTRON
SBS	Chr1	3555044	A-G	HET	INTERGENIC
SBS	Chr1	38985634	T-C	HET	INTERGENIC
SBS	Chr1	5155659	T-C	HET	INTERGENIC
SBS	Chr1	5263225	T-A	HET	INTERGENIC
SBS	Chr1	5658829	T-A	HET	INTERGENIC
SBS	Chr10	12355755	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24110
SBS	Chr10	15217677	A-T	HET	INTERGENIC
SBS	Chr10	16935003	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32260
SBS	Chr10	2724482	G-A	HET	INTERGENIC
SBS	Chr11	1336038	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03484
SBS	Chr11	13499617	G-A	HET	INTERGENIC
SBS	Chr11	19299323	A-G	HOMO	INTERGENIC
SBS	Chr12	10753975	T-A	HOMO	INTERGENIC
SBS	Chr12	23536198	G-A	HOMO	INTERGENIC
SBS	Chr2	20161171	G-T	HET	INTERGENIC
SBS	Chr2	24218704	T-C	HOMO	INTERGENIC
SBS	Chr3	22420180	G-A	HET	INTERGENIC
SBS	Chr3	268419	G-A	HET	INTERGENIC
SBS	Chr4	33511067	G-A	HOMO	INTERGENIC
SBS	Chr5	17657890	C-T	HET	INTERGENIC
SBS	Chr5	2240496	G-A	HET	INTERGENIC
SBS	Chr5	2240555	A-G	HET	INTERGENIC
SBS	Chr5	4168906	G-C	HET	INTERGENIC
SBS	Chr5	5147850	G-A	HET	INTERGENIC
SBS	Chr6	11069218	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g19430
SBS	Chr6	14022592	G-A	HET	INTERGENIC
SBS	Chr6	15574010	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g27510
SBS	Chr6	20086297	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g34520
SBS	Chr6	6494224	A-G	HET	INTRON
SBS	Chr6	7549286	A-G	HOMO	INTERGENIC
SBS	Chr7	14910713	A-C	HOMO	INTRON
SBS	Chr8	12190858	G-A	HET	INTERGENIC
SBS	Chr8	14571144	A-C	HET	INTERGENIC
SBS	Chr8	9688631	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	17382564	A-T	HOMO	INTRON
SBS	Chr9	18052310	A-C	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1969728	1969729	1
Deletion	Chr8	2626546	2626548	2
Deletion	Chr10	3724761	3724763	2
Deletion	Chr1	5711031	5711033	2
Deletion	Chr4	6429258	6429261	3	LOC_Os04g11730
Deletion	Chr1	6798220	6798229	9
Deletion	Chr5	7628140	7628141	1
Deletion	Chr5	9043531	9043535	4
Deletion	Chr12	9733441	9733443	2
Deletion	Chr10	12158976	12158978	2
Deletion	Chr8	12782747	12782753	6
Deletion	Chr10	16077343	16077352	9
Deletion	Chr10	17869340	17869369	29
Deletion	Chr9	18097825	18097826	1
Deletion	Chr3	19767557	19767565	8	LOC_Os03g35690
Deletion	Chr6	22677457	22677464	7
Deletion	Chr8	23277604	23277637	33
Deletion	Chr3	32760611	32760613	2	LOC_Os03g57460
Deletion	Chr1	38708711	38708717	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12883923	12883924	2
Insertion	Chr5	18832874	18832875	2
Insertion	Chr5	22563253	22563253	1
Insertion	Chr6	3255931	3255932	2
Insertion	Chr9	4417779	4417779	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	8935119	9334720	LOC_Os05g15820
Inversion	Chr5	9334721	11075627	LOC_Os05g19080
Inversion	Chr4	20348609	20532269	LOC_Os04g33600

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1881833	Chr2	28621085
Translocation	Chr4	20348615	Chr3	18647676	LOC_Os04g33600
Translocation	Chr4	20532276	Chr3	18648029

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