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Mutant Information

Mutant Name	FN1089-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1089-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16999007	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31090
SBS	Chr1	20286934	G-T	HET	SYNONYMOUS_CODING
SBS	Chr1	20927405	G-T	HET	INTERGENIC
SBS	Chr1	7127325	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12870
SBS	Chr10	11029918	A-C	HOMO	INTERGENIC
SBS	Chr10	20874999	C-T	HET	INTERGENIC
SBS	Chr11	18415974	A-G	HET	INTRON
SBS	Chr11	25524108	G-A	HET	INTRON
SBS	Chr11	27019946	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44680
SBS	Chr12	14186464	T-A	HOMO	INTERGENIC
SBS	Chr12	18938844	G-A	HET	UTR_3_PRIME
SBS	Chr12	20996112	T-C	HET	INTERGENIC
SBS	Chr12	24571455	G-A	HOMO	INTRON
SBS	Chr12	4417373	C-T	HOMO	INTERGENIC
SBS	Chr2	11385050	C-T	HOMO	INTERGENIC
SBS	Chr2	22867403	T-C	HET	INTRON
SBS	Chr2	23194480	C-G	HET	INTERGENIC
SBS	Chr2	30423723	T-A	HET	INTERGENIC
SBS	Chr2	7212026	T-C	HET	INTERGENIC
SBS	Chr3	11392487	C-T	HET	INTERGENIC
SBS	Chr3	2773955	C-T	HET	INTERGENIC
SBS	Chr3	28662391	T-C	HET	INTERGENIC
SBS	Chr3	3763679	A-G	HET	INTERGENIC
SBS	Chr4	15325223	C-A	HOMO	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	19045630	C-T	HOMO	INTRON
SBS	Chr4	20786979	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g34320
SBS	Chr4	26340740	C-T	HET	INTERGENIC
SBS	Chr5	20369899	T-A	HET	INTERGENIC
SBS	Chr5	4840549	C-T	HET	INTERGENIC
SBS	Chr5	5585103	A-G	HET	INTERGENIC
SBS	Chr6	10625428	C-T	HOMO	INTERGENIC
SBS	Chr6	20211010	G-A	HET	INTERGENIC
SBS	Chr6	25778143	G-A	HET	INTERGENIC
SBS	Chr6	29134383	C-G	HET	UTR_3_PRIME
SBS	Chr6	8401859	C-T	HET	INTERGENIC
SBS	Chr7	16703086	T-A	HOMO	INTERGENIC
SBS	Chr7	18745419	G-T	HOMO	INTERGENIC
SBS	Chr7	22579352	C-T	HET	INTERGENIC
SBS	Chr7	26826378	G-A	HOMO	INTERGENIC
SBS	Chr8	26038646	C-T	HET	INTERGENIC
SBS	Chr8	5925673	T-G	HET	INTERGENIC
SBS	Chr9	14361287	A-T	HET	INTERGENIC
SBS	Chr9	7504043	C-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	395411	395431	20
Deletion	Chr11	1584476	1584477	1
Deletion	Chr2	1799322	1799330	8
Deletion	Chr2	2130991	2131023	32
Deletion	Chr6	2139657	2139663	6
Deletion	Chr12	4517276	4517288	12	LOC_Os12g08780
Deletion	Chr4	5067879	5067906	27
Deletion	Chr3	5716271	5716272	1
Deletion	Chr7	9201688	9201701	13
Deletion	Chr11	11643019	11643030	11
Deletion	Chr8	12838481	12838485	4
Deletion	Chr9	14379177	14379179	2
Deletion	Chr7	16700384	16700476	92	LOC_Os07g28540
Deletion	Chr1	20887058	20887066	8
Deletion	Chr12	24675304	24675308	4
Deletion	Chr3	26984001	27021000	37000	4
Deletion	Chr3	26986104	27020899	34795	3
Deletion	Chr1	42748264	42748685	421

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23371282	23371283	2
Insertion	Chr1	40468997	40468999	3
Insertion	Chr4	9336014	9336015	2
Insertion	Chr5	1778871	1778873	3
Insertion	Chr5	24126885	24126885	1
Insertion	Chr6	7561931	7561931	1
Insertion	Chr7	29332646	29332647	2
Insertion	Chr8	20315618	20315627	10

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5766949	6515542	2
Inversion	Chr1	8923533	9732266	LOC_Os01g15840
Inversion	Chr9	9961390	10821850	LOC_Os09g17690
Inversion	Chr9	10821876	10833833	2
Inversion	Chr6	14464932	14524940

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6747445	Chr8	19016788

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