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Mutant Information

Mutant Name	FN1093-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1093-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17969287	G-A	HET	INTERGENIC
SBS	Chr1	29650252	C-T	HET	INTERGENIC
SBS	Chr1	35750039	A-G	HET	INTERGENIC
SBS	Chr1	38254672	A-G	HET	UTR_5_PRIME
SBS	Chr10	10702789	A-T	HET	INTERGENIC
SBS	Chr10	10702790	C-T	HET	INTERGENIC
SBS	Chr10	11417524	A-T	HOMO	INTERGENIC
SBS	Chr10	12534337	G-C	HET	INTERGENIC
SBS	Chr11	10664398	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g18790
SBS	Chr11	24124892	A-T	HET	INTRON
SBS	Chr11	778173	C-T	HOMO	INTERGENIC
SBS	Chr12	7378271	T-C	HOMO	INTRON
SBS	Chr2	21356307	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g35520
SBS	Chr2	22106024	T-C	HOMO	INTERGENIC
SBS	Chr2	29684414	T-C	HOMO	INTERGENIC
SBS	Chr2	32146241	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52530
SBS	Chr3	2756771	G-A	HET	INTERGENIC
SBS	Chr3	2831837	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05670
SBS	Chr3	28951218	G-A	HOMO	INTERGENIC
SBS	Chr3	29610961	G-T	HET	INTERGENIC
SBS	Chr3	31661364	G-T	HOMO	INTERGENIC
SBS	Chr3	486927	C-T	HET	INTERGENIC
SBS	Chr5	12122345	C-T	HOMO	INTERGENIC
SBS	Chr5	20661750	C-T	HET	INTERGENIC
SBS	Chr5	2494267	C-A	HOMO	INTERGENIC
SBS	Chr5	26136473	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44960
SBS	Chr6	10357290	A-G	HOMO	INTRON
SBS	Chr6	20569481	C-T	HET	INTERGENIC
SBS	Chr6	276040	G-A	HET	INTERGENIC
SBS	Chr6	5026353	C-T	HET	INTERGENIC
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr6	7380539	G-A	HET	INTRON
SBS	Chr7	13051099	G-A	HET	INTERGENIC
SBS	Chr8	10381045	G-A	HET	INTERGENIC
SBS	Chr8	1872709	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g03930
SBS	Chr8	18808807	C-T	HOMO	INTRON
SBS	Chr8	20986180	C-A	HOMO	INTERGENIC
SBS	Chr8	6506570	C-T	HET	INTERGENIC
SBS	Chr8	9191549	C-T	HET	INTERGENIC
SBS	Chr9	4076991	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5709653	G-C	HOMO	INTERGENIC
SBS	Chr9	7994950	C-T	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	166108	166111	3
Deletion	Chr10	1051847	1051849	2
Deletion	Chr11	1485527	1485549	22
Deletion	Chr11	1705225	1705234	9	LOC_Os11g04190
Deletion	Chr5	3735483	3735494	11
Deletion	Chr5	5550054	5550055	1
Deletion	Chr3	6820209	6820241	32
Deletion	Chr8	7608628	7608629	1
Deletion	Chr7	8388856	8388858	2
Deletion	Chr6	12095566	12095567	1
Deletion	Chr10	13388048	13388078	30	LOC_Os10g25830
Deletion	Chr9	16466831	16466832	1	LOC_Os09g27060
Deletion	Chr7	18272369	18272371	2
Deletion	Chr8	25733980	25733981	1
Deletion	Chr11	27239592	27239593	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2329880	2329881	2
Insertion	Chr3	23379773	23379773	1
Insertion	Chr8	3347906	3347907	2
Insertion	Chr9	18262261	18262261	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1928564	3090448	2
Inversion	Chr6	1928577	3090453	2
Inversion	Chr11	8518369	8565314

No Translocation

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