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| Mutant Information |
|---|
| Mutant Name | FN1094-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1094-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 49
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14522504 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 14740421 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 17023865 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 2044402 | C-G | HET | INTERGENIC | |
| SBS | Chr1 | 2325116 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 23297705 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr1 | 30260065 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr1 | 31913967 | C-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 40174602 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 10043080 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g20020 |
| SBS | Chr10 | 14883792 | C-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 2293733 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 2484291 | G-A | HOMO | INTRON | |
| SBS | Chr11 | 17833607 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 20954566 | A-G | HET | INTRON | |
| SBS | Chr11 | 3157560 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 4370637 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 8257237 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g14650 |
| SBS | Chr11 | 8493200 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g15090 |
| SBS | Chr12 | 14980045 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g25830 |
| SBS | Chr12 | 4673801 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 11884336 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 6144240 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g11850 |
| SBS | Chr2 | 7735754 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 8693012 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 25747445 | A-G | HOMO | INTRON | |
| SBS | Chr3 | 5558728 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g10830 |
| SBS | Chr4 | 20977411 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g34680 |
| SBS | Chr4 | 463394 | A-G | HOMO | INTERGENIC | |
| SBS | Chr5 | 14847781 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 15838816 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 16630315 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 19072390 | T-A | HET | INTRON | |
| SBS | Chr5 | 19072391 | G-A | HET | INTRON | |
| SBS | Chr5 | 21460785 | T-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g36190 |
| SBS | Chr5 | 5734401 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 1138962 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr6 | 25402002 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 1914112 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr7 | 29069046 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 9669552 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 12940485 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 24628325 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 24628326 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 11481360 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 22194973 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g38580 |
| SBS | Chr9 | 22220590 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 5221584 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 8095105 | A-C | HET | INTERGENIC |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 3564517 | 3564529 | 12 | |
| Deletion | Chr3 | 3641164 | 3641180 | 16 | |
| Deletion | Chr3 | 4697329 | 4697864 | 535 | LOC_Os03g09060 |
| Deletion | Chr11 | 5557934 | 5557935 | 1 | |
| Deletion | Chr10 | 6488013 | 6488023 | 10 | |
| Deletion | Chr2 | 8483190 | 8483191 | 1 | |
| Deletion | Chr3 | 8662487 | 8662489 | 2 | |
| Deletion | Chr5 | 9817790 | 9817795 | 5 | |
| Deletion | Chr9 | 9837204 | 9837207 | 3 | |
| Deletion | Chr11 | 13091414 | 13091415 | 1 | |
| Deletion | Chr10 | 16238349 | 16238350 | 1 | LOC_Os10g31040 |
| Deletion | Chr5 | 16550033 | 16550034 | 1 | |
| Deletion | Chr5 | 16621243 | 16621254 | 11 | |
| Deletion | Chr1 | 16675026 | 16675033 | 7 | LOC_Os01g29760 |
| Deletion | Chr6 | 17559247 | 17559249 | 2 | |
| Deletion | Chr10 | 18705781 | 18705785 | 4 | LOC_Os10g35060 |
| Deletion | Chr5 | 18888880 | 18888885 | 5 | |
| Deletion | Chr6 | 19735877 | 19735882 | 5 | |
| Deletion | Chr11 | 20937272 | 20937281 | 9 | |
| Deletion | Chr5 | 21828586 | 21828591 | 5 | |
| Deletion | Chr1 | 23101364 | 23101368 | 4 | |
| Deletion | Chr1 | 23296693 | 23296694 | 1 | LOC_Os01g41145 |
| Deletion | Chr11 | 23376895 | 23376896 | 1 | |
| Deletion | Chr5 | 25149287 | 25149289 | 2 | |
| Deletion | Chr1 | 25591933 | 25591939 | 6 | |
| Deletion | Chr11 | 28126756 | 28126759 | 3 | |
| Deletion | Chr4 | 32897826 | 32897828 | 2 | |
| Deletion | Chr1 | 40707945 | 40707959 | 14 | LOC_Os01g70290 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 20682383 | 20682385 | 3 | |
| Insertion | Chr5 | 3129049 | 3129049 | 1 | LOC_Os05g06220 |
| Insertion | Chr5 | 7224306 | 7224306 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 3854044 | 4415307 | |
| Inversion | Chr9 | 5616977 | 5628518 | |
| Inversion | Chr9 | 5628521 | 5637671 | |
| Inversion | Chr3 | 14985740 | 14990597 | |
| Inversion | Chr3 | 14985761 | 14990612 | |
| Inversion | Chr11 | 16137736 | 16545281 | |
| Inversion | Chr5 | 18436097 | 19067475 | LOC_Os05g31680 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 7819800 | Chr6 | 27804725 | |
| Translocation | Chr10 | 10626075 | Chr3 | 25867551 | LOC_Os10g20990 |
| Translocation | Chr7 | 10973176 | Chr3 | 17310314 | LOC_Os03g30350 |
| Translocation | Chr7 | 10991343 | Chr3 | 17310308 | LOC_Os03g30350 |
| Translocation | Chr5 | 18436133 | Chr3 | 4697330 | 2 |
| Translocation | Chr5 | 19067486 | Chr3 | 4697898 | LOC_Os03g09060 |