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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	19533194	G-A	HOMO	INTERGENIC
SBS	Chr10	8276836	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g16600
SBS	Chr11	16497385	A-T	HOMO	INTERGENIC
SBS	Chr2	6628306	T-G	HET	INTERGENIC
SBS	Chr3	23281340	C-A	HOMO	UTR_3_PRIME
SBS	Chr3	31293940	C-A	HET	INTERGENIC
SBS	Chr3	35394178	T-C	HET	INTRON
SBS	Chr3	4980643	G-T	HET	INTERGENIC
SBS	Chr4	1375164	C-A	HET	INTERGENIC
SBS	Chr4	23571834	G-T	HET	INTERGENIC
SBS	Chr4	28013124	G-A	HET	INTERGENIC
SBS	Chr4	35075780	A-T	HET	INTERGENIC
SBS	Chr4	4021044	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07560
SBS	Chr5	14519304	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	18063395	C-T	HOMO	INTRON
SBS	Chr5	27533052	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g48020
SBS	Chr6	4492420	T-C	HOMO	INTRON
SBS	Chr7	12526261	C-A	HOMO	INTERGENIC
SBS	Chr7	25699947	G-C	HET	INTRON
SBS	Chr7	8031521	C-T	HOMO	INTERGENIC
SBS	Chr7	8370326	G-T	HOMO	INTERGENIC
SBS	Chr8	1306430	T-A	HET	STOP_GAINED	LOC_Os08g02990
SBS	Chr8	21427032	C-T	HET	INTRON
SBS	Chr8	507917	A-T	HET	INTERGENIC
SBS	Chr8	507918	C-T	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2133391	2133392	1	LOC_Os03g04570
Deletion	Chr10	4548386	4548403	17
Deletion	Chr1	5622077	5622081	4
Deletion	Chr8	5983181	5983187	6
Deletion	Chr9	7972604	7972614	10
Deletion	Chr9	12011001	12161000	150000	23
Deletion	Chr12	13459876	13459892	16
Deletion	Chr1	15221217	15222012	795	LOC_Os01g27270
Deletion	Chr3	20340141	20340146	5	LOC_Os03g36670
Deletion	Chr11	20709094	20713281	4187	LOC_Os11g35320
Deletion	Chr5	22494834	22494838	4	LOC_Os05g38370
Deletion	Chr4	28003112	28003115	3	LOC_Os04g47160
Deletion	Chr1	35838531	35838533	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	19934975	19934975	1
Insertion	Chr3	12114390	12114391	2
Insertion	Chr3	7620255	7620256	2
Insertion	Chr4	919743	919743	1
Insertion	Chr7	24851127	24851130	4
Insertion	Chr8	28038090	28038091	2
Insertion	Chr9	16614270	16614270	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	17883285	Chr3	31648046

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