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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32153821	A-G	HET	INTERGENIC
SBS	Chr1	39203902	C-T	HET	INTERGENIC
SBS	Chr1	39203907	A-T	HET	INTERGENIC
SBS	Chr2	27162096	G-A	HET	INTRON
SBS	Chr2	27610261	A-C	HET	INTERGENIC
SBS	Chr2	33205961	G-C	HET	INTERGENIC
SBS	Chr2	35097003	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57290
SBS	Chr3	9631614	C-T	HOMO	INTRON
SBS	Chr3	20534642	G-A	HET	INTERGENIC
SBS	Chr3	25981579	G-A	HOMO	INTRON
SBS	Chr3	28161928	G-A	HOMO	INTERGENIC
SBS	Chr4	13616501	A-T	HET	INTERGENIC
SBS	Chr4	23024048	T-A	HOMO	UTR_5_PRIME
SBS	Chr5	13275464	C-T	HOMO	INTRON
SBS	Chr6	612871	G-A	HET	INTERGENIC
SBS	Chr7	9268735	C-G	HOMO	INTERGENIC
SBS	Chr7	12499663	C-T	HET	INTERGENIC
SBS	Chr7	27831223	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	2915714	G-A	HET	INTERGENIC
SBS	Chr8	3949232	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	19013652	T-C	HOMO	INTRON
SBS	Chr9	15909156	T-C	HET	INTERGENIC
SBS	Chr9	17582661	G-C	HET	INTERGENIC
SBS	Chr10	8388473	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16840
SBS	Chr10	12872256	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g25010
SBS	Chr12	8713153	C-T	HET	INTERGENIC
SBS	Chr12	8723726	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g15300
SBS	Chr12	8723800	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr12	8723810	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g15300

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	383935	383940	5	LOC_Os07g01620
Deletion	Chr2	1345350	1345361	11
Deletion	Chr8	1936587	1936591	4
Deletion	Chr7	4755745	4755764	19
Deletion	Chr8	5095986	5095990	4
Deletion	Chr6	6372429	6372430	1	LOC_Os06g11970
Deletion	Chr2	7336140	7336141	1
Deletion	Chr11	10677414	10677424	10	LOC_Os11g18810
Deletion	Chr10	15524602	15524611	9	LOC_Os10g29880
Deletion	Chr8	17838515	17838527	12
Deletion	Chr7	18080718	18080719	1
Deletion	Chr4	18335868	18335874	6
Deletion	Chr12	20728406	20728407	1
Deletion	Chr12	23024095	23024096	1
Deletion	Chr6	25177836	25200523	22687	4
Deletion	Chr7	25798730	25798731	1
Deletion	Chr8	26888811	26888819	8
Deletion	Chr6	27330657	27330664	7
Deletion	Chr11	28124863	28124870	7
Deletion	Chr3	30501411	30501412	1
Deletion	Chr4	33370183	33370185	2
Deletion	Chr1	40107058	40107060	2	LOC_Os01g69030

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	5424329	5424330	2
Insertion	Chr10	11061672	11061673	2
Insertion	Chr2	7763376	7763377	2
Insertion	Chr2	19293462	19293463	2
Insertion	Chr4	8338683	8338683	1
Insertion	Chr5	12107831	12107831	1
Insertion	Chr6	24610240	24610241	2
Insertion	Chr7	1274621	1274644	24	LOC_Os07g03230
Insertion	Chr9	17152858	17152858	1
Insertion	Chr10	21836011	21836012	2	LOC_Os10g40710

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	25177850	Chr3	25354096

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