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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37625170	A-T	HET	INTERGENIC
SBS	Chr1	39743119	G-T	HET	INTERGENIC
SBS	Chr1	9741009	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g17010
SBS	Chr10	1341172	G-A	HET	INTERGENIC
SBS	Chr10	16948578	T-A	HOMO	INTERGENIC
SBS	Chr10	16948580	C-A	HOMO	INTERGENIC
SBS	Chr10	19384345	G-A	HET	INTERGENIC
SBS	Chr10	3485323	T-A	HET	INTERGENIC
SBS	Chr10	3485324	T-A	HET	INTERGENIC
SBS	Chr10	546372	C-T	HET	INTRON
SBS	Chr11	14622033	T-A	HET	INTRON
SBS	Chr11	17089330	A-C	HET	INTERGENIC
SBS	Chr11	19124991	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32369
SBS	Chr12	12607066	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	13235027	T-G	HET	INTERGENIC
SBS	Chr2	10475063	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18040
SBS	Chr2	23267859	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38480
SBS	Chr2	29169167	A-G	HET	INTERGENIC
SBS	Chr2	34081652	A-G	HOMO	INTERGENIC
SBS	Chr3	19309986	A-G	HET	INTERGENIC
SBS	Chr3	30082106	C-T	HET	INTERGENIC
SBS	Chr4	16788040	A-G	HET	INTERGENIC
SBS	Chr4	23016275	A-G	HOMO	INTERGENIC
SBS	Chr4	31673245	G-A	HET	INTRON
SBS	Chr5	12510726	G-A	HET	INTERGENIC
SBS	Chr5	16818561	A-T	HET	SPLICE_SITE_REGION
SBS	Chr6	8631361	G-A	HET	INTERGENIC
SBS	Chr7	14692465	C-T	HOMO	INTRON
SBS	Chr7	16576224	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28370
SBS	Chr7	19044128	T-C	HET	INTERGENIC
SBS	Chr7	19156138	C-T	HET	INTERGENIC
SBS	Chr7	20104252	A-T	HET	INTERGENIC
SBS	Chr7	22362442	G-T	HOMO	INTERGENIC
SBS	Chr7	22362443	A-T	HOMO	INTERGENIC
SBS	Chr7	9168550	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g15790
SBS	Chr8	6422563	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10890
SBS	Chr8	8807498	C-T	HOMO	INTERGENIC
SBS	Chr9	3711530	A-T	HOMO	INTRON
SBS	Chr9	9289811	G-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	548431	548434	3
Deletion	Chr9	3358951	3358955	4
Deletion	Chr9	3769051	3769069	18
Deletion	Chr6	8685001	8794000	109000	19
Deletion	Chr6	8814001	8869000	55000	12
Deletion	Chr10	11863392	11863406	14
Deletion	Chr6	12727281	12727282	1
Deletion	Chr5	16317352	16317353	1	LOC_Os05g27960
Deletion	Chr3	16757064	16757068	4
Deletion	Chr5	16818565	16818572	7	LOC_Os05g28670
Deletion	Chr5	16828166	16828177	11
Deletion	Chr10	16948835	16948836	1
Deletion	Chr2	17342257	17342263	6
Deletion	Chr7	18967149	18967150	1	LOC_Os07g31900
Deletion	Chr11	20986275	20986277	2
Deletion	Chr3	23927254	23927261	7
Deletion	Chr3	27163247	27163253	6
Deletion	Chr4	31790985	31790992	7
Deletion	Chr1	32583049	32583052	3
Deletion	Chr1	36176429	36176435	6
Deletion	Chr1	41191390	41191391	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	17088960	17088960	1
Insertion	Chr11	4803269	4803270	2
Insertion	Chr11	8849821	8849821	1
Insertion	Chr6	23543748	23543750	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26413791	27672372	LOC_Os04g44640

No Translocation

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