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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11996101	G-A	HET	INTERGENIC
SBS	Chr1	15309924	C-T	HET	INTRON
SBS	Chr1	35505778	G-A	HOMO	UTR_3_PRIME
SBS	Chr1	37497191	C-T	HOMO	INTERGENIC
SBS	Chr1	42468013	C-A	HET	INTRON
SBS	Chr1	5070315	C-T	HET	INTERGENIC
SBS	Chr1	9470130	T-G	HOMO	INTERGENIC
SBS	Chr10	11543382	T-C	HET	UTR_3_PRIME
SBS	Chr10	13768800	T-C	HET	INTERGENIC
SBS	Chr10	15500137	C-T	HET	INTERGENIC
SBS	Chr10	9973230	T-C	HOMO	INTERGENIC
SBS	Chr11	15184707	C-T	HET	INTERGENIC
SBS	Chr11	24763424	G-A	HOMO	INTERGENIC
SBS	Chr11	521210	C-A	HET	INTRON
SBS	Chr11	6002826	A-C	HET	INTERGENIC
SBS	Chr11	6449964	T-G	HET	INTERGENIC
SBS	Chr11	8849387	T-C	HET	INTERGENIC
SBS	Chr12	12610745	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	14831299	G-C	HET	INTERGENIC
SBS	Chr12	1820014	C-T	HET	INTRON
SBS	Chr12	23544788	G-A	HOMO	INTERGENIC
SBS	Chr2	11608366	G-A	HET	INTERGENIC
SBS	Chr2	24121099	C-T	HET	INTERGENIC
SBS	Chr2	699997	C-A	HOMO	INTERGENIC
SBS	Chr3	11847648	T-C	HOMO	INTRON
SBS	Chr3	14136193	A-G	HET	INTERGENIC
SBS	Chr3	21370465	C-T	HOMO	INTERGENIC
SBS	Chr3	28984926	A-G	HET	INTERGENIC
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	22427400	G-T	HOMO	INTERGENIC
SBS	Chr4	2793955	A-T	HET	INTERGENIC
SBS	Chr4	3193149	C-G	HET	INTERGENIC
SBS	Chr5	11332436	A-T	HET	INTERGENIC
SBS	Chr5	13687749	C-T	HET	INTERGENIC
SBS	Chr5	16404526	C-T	HET	INTERGENIC
SBS	Chr5	18788689	C-T	HOMO	INTERGENIC
SBS	Chr5	4659133	T-A	HOMO	INTERGENIC
SBS	Chr6	11477729	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20020
SBS	Chr6	12709952	A-T	HOMO	INTRON
SBS	Chr7	10292781	A-T	HET	INTERGENIC
SBS	Chr7	11253352	G-T	HET	INTERGENIC
SBS	Chr7	13883208	C-T	HET	INTERGENIC
SBS	Chr8	20466247	T-A	HOMO	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3035336	3035338	2
Deletion	Chr2	3653993	3654002	9
Deletion	Chr11	6096748	6096756	8
Deletion	Chr3	7245670	7245682	12
Deletion	Chr5	8398885	8398940	55
Deletion	Chr2	8718814	8718819	5
Deletion	Chr11	8961759	8961763	4
Deletion	Chr7	9108191	9108192	1
Deletion	Chr1	10474333	10474335	2
Deletion	Chr11	11093707	11093717	10
Deletion	Chr11	11279152	11279157	5
Deletion	Chr6	12373292	12373293	1
Deletion	Chr12	13162099	13162117	18
Deletion	Chr12	13389593	13397215	7622
Deletion	Chr5	14759368	14759369	1
Deletion	Chr10	15163225	15163240	15
Deletion	Chr10	18033409	18033419	10
Deletion	Chr10	19237647	19237655	8
Deletion	Chr9	21158586	21158595	9
Deletion	Chr11	21390195	21390205	10
Deletion	Chr8	21701378	21701380	2	LOC_Os08g34550
Deletion	Chr11	25530966	25530977	11
Deletion	Chr8	25943062	25943064	2
Deletion	Chr11	27608520	27608525	5	LOC_Os11g45620
Deletion	Chr8	27625588	27625590	2
Deletion	Chr2	31045486	31045487	1
Deletion	Chr3	34852434	34852437	3	LOC_Os03g61410

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	18094826	18094826	1
Insertion	Chr10	19473448	19473449	2
Insertion	Chr11	16367368	16367369	2
Insertion	Chr6	4492630	4492632	3
Insertion	Chr7	22930902	22930903	2	LOC_Os07g38240
Insertion	Chr7	26267327	26267328	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12300076	12478183
Inversion	Chr2	20193299	20259959
Inversion	Chr2	20193310	20260035
Inversion	Chr1	37155451	37345931	LOC_Os01g63990

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	20260028	Chr1	19348955

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