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Mutant Information

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7325983	G-A	HOMO	INTRON
SBS	Chr1	10344364	A-C	HET	INTERGENIC
SBS	Chr1	11159769	C-A	HET	INTERGENIC
SBS	Chr1	21845423	A-T	HET	INTRON
SBS	Chr2	475291	C-T	HET	INTERGENIC
SBS	Chr2	14580953	G-A	HET	INTERGENIC
SBS	Chr2	28336036	A-T	HET	INTERGENIC
SBS	Chr2	31384295	G-A	HOMO	INTERGENIC
SBS	Chr2	31915813	T-C	HET	INTERGENIC
SBS	Chr2	32357838	T-G	HET	INTERGENIC
SBS	Chr3	3369678	G-A	HET	INTERGENIC
SBS	Chr3	7247117	G-A	HET	INTERGENIC
SBS	Chr3	14429162	C-T	HOMO	INTERGENIC
SBS	Chr3	15497178	C-T	HOMO	INTERGENIC
SBS	Chr3	20763029	C-T	HOMO	INTERGENIC
SBS	Chr3	22059287	G-A	HET	INTERGENIC
SBS	Chr3	26012146	C-G	HET	INTERGENIC
SBS	Chr4	3449784	T-C	HET	INTERGENIC
SBS	Chr4	9641948	A-T	HOMO	INTERGENIC
SBS	Chr4	11458047	T-G	HOMO	INTERGENIC
SBS	Chr4	13790834	T-G	HET	INTERGENIC
SBS	Chr4	18078571	A-C	HET	INTRON
SBS	Chr5	10741289	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18550
SBS	Chr5	14673902	C-G	HOMO	INTERGENIC
SBS	Chr6	7024619	G-A	HET	INTERGENIC
SBS	Chr6	12702198	C-T	HET	INTERGENIC
SBS	Chr6	30880555	A-T	HET	INTERGENIC
SBS	Chr7	7019045	G-C	HET	SYNONYMOUS_CODING
SBS	Chr7	13349159	A-G	HET	INTERGENIC
SBS	Chr8	7091024	A-T	HET	INTERGENIC
SBS	Chr8	10567532	G-T	HET	UTR_5_PRIME
SBS	Chr8	22811119	C-T	HOMO	INTRON
SBS	Chr9	4154764	G-A	HOMO	INTERGENIC
SBS	Chr9	6275759	T-A	HOMO	INTERGENIC
SBS	Chr9	7508706	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g13000
SBS	Chr9	8599881	A-G	HET	INTERGENIC
SBS	Chr9	10230348	T-A	HOMO	INTERGENIC
SBS	Chr9	12768232	G-T	HET	INTERGENIC
SBS	Chr10	15024892	G-A	HET	INTERGENIC
SBS	Chr11	17739769	G-A	HOMO	INTERGENIC
SBS	Chr11	20928646	G-A	HOMO	INTERGENIC
SBS	Chr11	26533732	C-T	HET	INTERGENIC
SBS	Chr12	9846788	C-T	HET	INTERGENIC
SBS	Chr12	16571279	G-A	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3475829	3475832	3
Deletion	Chr5	6885277	6885281	4
Deletion	Chr3	7905179	7905184	5
Deletion	Chr1	9110056	9110057	1
Deletion	Chr5	10312255	10312258	3
Deletion	Chr5	13357234	13357235	1	LOC_Os05g23380
Deletion	Chr5	14514080	14514081	1	LOC_Os05g25070
Deletion	Chr2	16015659	16015673	14
Deletion	Chr10	16536974	16536979	5
Deletion	Chr2	16685355	16685361	6
Deletion	Chr12	17568808	17568844	36
Deletion	Chr2	19152763	19152767	4
Deletion	Chr6	20401742	20401744	2
Deletion	Chr4	23872270	23872286	16	LOC_Os04g40090
Deletion	Chr12	24230980	24230984	4
Deletion	Chr5	25665389	25665390	1	LOC_Os05g44160
Deletion	Chr1	27613355	27613373	18
Deletion	Chr1	28112468	28112478	10
Deletion	Chr3	29786705	29786742	37	LOC_Os03g51920
Deletion	Chr2	34638879	34638895	16	LOC_Os02g56550
Deletion	Chr2	35385679	35385681	2
Deletion	Chr1	36260001	36318000	58000	11

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	19295064	19295065	2
Insertion	Chr2	28012238	28012239	2
Insertion	Chr9	9197671	9197672	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1986661	2252154	LOC_Os06g05100
Inversion	Chr3	3004422	4598577	LOC_Os03g06010
Inversion	Chr5	24086779	24311626	LOC_Os05g41120
Inversion	Chr1	36151199	36369164	LOC_Os01g62800

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3004	Chr6	2252161	2

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