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Mutant Information

Mutant Name	FN1113-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1113-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15637375	A-G	HET	INTERGENIC
SBS	Chr1	19129183	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34680
SBS	Chr1	34231366	G-C	HET	INTERGENIC
SBS	Chr1	38507297	G-A	HET	INTERGENIC
SBS	Chr1	883213	T-G	HET	INTERGENIC
SBS	Chr10	11683368	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	13369523	C-T	HET	INTERGENIC
SBS	Chr10	6631492	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11954
SBS	Chr10	8106418	A-G	HET	INTERGENIC
SBS	Chr12	11059240	C-T	HET	INTERGENIC
SBS	Chr12	19669009	C-T	HET	INTERGENIC
SBS	Chr12	23527390	A-G	HET	INTERGENIC
SBS	Chr12	23527392	A-T	HET	INTERGENIC
SBS	Chr12	24093479	A-T	HET	INTERGENIC
SBS	Chr12	9294668	C-T	HET	INTERGENIC
SBS	Chr2	15145791	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25850
SBS	Chr2	15145793	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25850
SBS	Chr2	15160521	C-T	HET	INTRON
SBS	Chr2	27844461	C-G	HET	INTERGENIC
SBS	Chr2	9168336	A-C	HET	INTERGENIC
SBS	Chr3	14453042	A-T	HET	INTERGENIC
SBS	Chr3	16001464	C-G	HOMO	INTERGENIC
SBS	Chr3	19410152	A-G	HET	INTRON
SBS	Chr3	30579571	C-T	HET	INTRON
SBS	Chr3	35426068	C-T	HET	INTRON
SBS	Chr3	5776600	T-C	HOMO	INTERGENIC
SBS	Chr3	5776605	T-C	HOMO	INTERGENIC
SBS	Chr3	5776613	A-T	HOMO	INTERGENIC
SBS	Chr5	14260246	A-T	HET	INTERGENIC
SBS	Chr5	14884147	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25600
SBS	Chr5	4325447	C-T	HET	INTERGENIC
SBS	Chr6	17591133	G-A	HET	INTERGENIC
SBS	Chr6	2277977	C-T	HET	INTRON
SBS	Chr6	29192966	A-G	HOMO	INTERGENIC
SBS	Chr6	3457816	A-C	HET	INTERGENIC
SBS	Chr6	3552740	T-C	HET	INTRON
SBS	Chr7	10850607	G-C	HOMO	INTERGENIC
SBS	Chr7	22984363	C-G	HET	INTRON
SBS	Chr8	1464617	C-G	HET	INTERGENIC
SBS	Chr8	17407965	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g28510
SBS	Chr8	23965782	A-T	HET	INTERGENIC
SBS	Chr9	4444468	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g08520

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4296116	4296120	4	LOC_Os09g08310
Deletion	Chr2	4440576	4440596	20
Deletion	Chr11	4851207	4851226	19	LOC_Os11g09110
Deletion	Chr12	8215862	8215878	16
Deletion	Chr6	9158790	9158791	1	LOC_Os06g16080
Deletion	Chr10	12841166	12841174	8	LOC_Os10g24940
Deletion	Chr10	16801385	16801393	8
Deletion	Chr5	17260866	17260879	13	LOC_Os05g29820
Deletion	Chr7	18052680	18052683	3
Deletion	Chr3	18319183	18319187	4	LOC_Os03g32030
Deletion	Chr3	20102755	20102756	1
Deletion	Chr2	20499233	20499240	7	LOC_Os02g34270
Deletion	Chr7	22785965	22785977	12
Deletion	Chr6	29192238	29192241	3
Deletion	Chr1	30158160	30158190	30	LOC_Os01g52490
Deletion	Chr1	31254316	31284604	30288	8
Deletion	Chr2	35695658	35695672	14	LOC_Os02g58360
Deletion	Chr1	41715994	41716012	18	LOC_Os01g71980

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23239268	23239268	1
Insertion	Chr11	4866717	4866718	2	LOC_Os11g09140
Insertion	Chr3	21038827	21038827	1
Insertion	Chr4	28640503	28640507	5
Insertion	Chr5	25672977	25672978	2
Insertion	Chr7	17560179	17560180	2
Insertion	Chr7	8746903	8746906	4
Insertion	Chr9	9768729	9768734	6

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8904593	Chr10	18963097

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