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Mutant Information

Mutant Name	FN1114-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1114-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14258265	T-G	HOMO	INTERGENIC
SBS	Chr1	1535644	T-A	HET	INTRON
SBS	Chr1	29775991	A-C	HET	UTR_3_PRIME
SBS	Chr1	38676085	T-C	HET	INTERGENIC
SBS	Chr1	42071508	G-A	HET	INTERGENIC
SBS	Chr10	18194352	T-C	HOMO	INTERGENIC
SBS	Chr10	19388055	A-C	HOMO	INTERGENIC
SBS	Chr11	11209195	A-G	HET	INTERGENIC
SBS	Chr11	16713140	C-G	HOMO	INTERGENIC
SBS	Chr11	27361102	C-A	HET	INTERGENIC
SBS	Chr11	7596610	C-T	HET	INTRON
SBS	Chr11	9851443	C-T	HOMO	INTRON
SBS	Chr12	8263853	C-G	HET	INTERGENIC
SBS	Chr2	20212545	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	5489954	C-G	HET	INTERGENIC
SBS	Chr3	17795438	G-A	HET	INTERGENIC
SBS	Chr3	21472654	T-C	HET	INTERGENIC
SBS	Chr3	22001628	T-C	HOMO	UTR_3_PRIME
SBS	Chr3	30711627	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	6901543	A-G	HOMO	INTERGENIC
SBS	Chr3	7452832	A-T	HET	UTR_3_PRIME
SBS	Chr4	13334128	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23350
SBS	Chr4	2047128	T-A	HET	INTERGENIC
SBS	Chr4	22496349	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37840
SBS	Chr4	27034946	T-C	HET	INTERGENIC
SBS	Chr4	29993243	T-C	HET	INTERGENIC
SBS	Chr5	11988951	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20430
SBS	Chr5	17847683	C-G	HET	INTERGENIC
SBS	Chr5	29682585	T-A	HOMO	INTERGENIC
SBS	Chr5	9676319	G-T	HET	INTERGENIC
SBS	Chr6	15637748	A-G	HET	INTERGENIC
SBS	Chr6	17129451	A-G	HET	INTERGENIC
SBS	Chr7	2458484	T-G	HET	UTR_3_PRIME
SBS	Chr8	13863063	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g23020
SBS	Chr8	20791448	G-A	HET	INTRON
SBS	Chr8	24938089	G-A	HET	INTERGENIC
SBS	Chr9	10778597	A-G	HET	INTERGENIC
SBS	Chr9	10928387	T-C	HET	INTERGENIC
SBS	Chr9	15765432	T-C	HET	INTERGENIC
SBS	Chr9	17453514	T-C	HET	INTERGENIC
SBS	Chr9	17615727	C-T	HET	INTERGENIC
SBS	Chr9	4621560	A-G	HOMO	INTERGENIC
SBS	Chr9	5292647	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09770

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3460572	3460579	7
Deletion	Chr5	3687663	3688657	994
Deletion	Chr7	4218634	4218660	26
Deletion	Chr2	6053139	6053143	4
Deletion	Chr4	6682823	6682824	1
Deletion	Chr10	7659224	7659227	3
Deletion	Chr9	8742648	8742680	32	LOC_Os09g14720
Deletion	Chr2	9443849	9443850	1
Deletion	Chr4	10798595	10798596	1
Deletion	Chr8	12961307	12961314	7	LOC_Os08g21690
Deletion	Chr4	12961367	12961368	1
Deletion	Chr11	18729031	18729037	6	LOC_Os11g31880
Deletion	Chr12	19497001	20428000	931000	146
Deletion	Chr12	19500573	19500574	1
Deletion	Chr4	20054001	20100000	46000	10
Deletion	Chr5	20330422	20330424	2
Deletion	Chr2	27035001	27204000	169000	28
Deletion	Chr1	31013160	31013161	1
Deletion	Chr1	38624596	38624598	2

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	4806220	4806221	2
Insertion	Chr12	23461991	23461992	2
Insertion	Chr2	10236211	10236214	4
Insertion	Chr2	16516655	16516656	2
Insertion	Chr2	19214790	19214793	4
Insertion	Chr2	35437236	35437237	2
Insertion	Chr6	2216295	2216296	2
Insertion	Chr7	8574640	8574640	1
Insertion	Chr9	15024747	15024764	18
Insertion	Chr9	20078444	20078453	10

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6313859	7817976	LOC_Os05g11180
Inversion	Chr5	6313872	7817979	LOC_Os05g11180
Inversion	Chr5	6675120	6935828	LOC_Os05g12130

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6366368	Chr4	16083640	2
Translocation	Chr8	10125732	Chr6	18090352	2

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