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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15709159	C-A	HET	INTRON
SBS	Chr1	20926201	A-T	HET	INTERGENIC
SBS	Chr1	25844711	G-A	HET	INTERGENIC
SBS	Chr1	37815529	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g65150
SBS	Chr1	38562381	G-A	HET	INTERGENIC
SBS	Chr1	5635333	G-A	HET	INTERGENIC
SBS	Chr10	23205988	A-G	HET	UTR_5_PRIME
SBS	Chr10	2794609	C-T	HET	UTR_3_PRIME
SBS	Chr11	18316577	G-T	HET	INTRON
SBS	Chr11	6031607	A-C	HET	INTRON
SBS	Chr11	7587452	G-A	HET	START_GAINED	LOC_Os11g13800
SBS	Chr2	20596692	G-C	HET	INTERGENIC
SBS	Chr2	25916363	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g43040
SBS	Chr3	11401594	G-A	HET	INTERGENIC
SBS	Chr3	19056290	G-A	HOMO	INTERGENIC
SBS	Chr3	19704332	C-T	HOMO	INTERGENIC
SBS	Chr3	33239734	T-C	HOMO	INTERGENIC
SBS	Chr4	19887942	A-G	HET	START_GAINED	LOC_Os04g32920
SBS	Chr4	20148962	C-G	HET	INTERGENIC
SBS	Chr4	20449029	A-G	HET	INTRON
SBS	Chr4	21631794	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g35530
SBS	Chr5	21384404	G-T	HET	INTERGENIC
SBS	Chr5	22430288	T-C	HET	INTERGENIC
SBS	Chr6	2234788	A-G	HET	SYNONYMOUS_CODING
SBS	Chr6	2421030	C-T	HOMO	UTR_3_PRIME
SBS	Chr6	7523157	T-A	HET	INTERGENIC
SBS	Chr7	26187779	T-A	HET	INTERGENIC
SBS	Chr8	11702353	C-T	HOMO	INTERGENIC
SBS	Chr8	4788281	T-C	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1918819	1918823	4	LOC_Os12g04510
Deletion	Chr5	4389894	4390052	158
Deletion	Chr8	5335001	5473000	138000	23
Deletion	Chr9	6276712	6276713	1	LOC_Os09g11310
Deletion	Chr2	8387909	8387911	2
Deletion	Chr6	8781847	8781848	1
Deletion	Chr6	9911001	9956000	45000	9
Deletion	Chr9	12347691	12347698	7	LOC_Os09g20480
Deletion	Chr6	16591046	16591058	12
Deletion	Chr1	16936478	16936486	8
Deletion	Chr2	18831099	18831107	8
Deletion	Chr5	22361032	22361070	38
Deletion	Chr7	23384097	23384877	780
Deletion	Chr5	25216037	25216042	5
Deletion	Chr7	25410165	25410172	7
Deletion	Chr1	25925757	25926505	748	2
Deletion	Chr7	26100211	26100225	14
Deletion	Chr6	27438882	27438883	1
Deletion	Chr12	27499005	27499009	4	LOC_Os12g44360
Deletion	Chr1	32326687	32326691	4
Deletion	Chr1	37356149	37356157	8	LOC_Os01g64350

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr3	17342421	17342422	2
Insertion	Chr3	17939408	17939408	1
Insertion	Chr3	35481865	35481865	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6033159	6346436	LOC_Os11g10920
Inversion	Chr1	15223933	16414119	LOC_Os01g27280

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6033136	Chr1	16414136	LOC_Os11g10920
Translocation	Chr11	7024322	Chr1	16417301
Translocation	Chr11	18299352	Chr9	6977461	LOC_Os09g12250
Translocation	Chr11	18299359	Chr9	6978809
Translocation	Chr4	19893670	Chr1	25926501	2
Translocation	Chr4	19893790	Chr1	25925770	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	2532341	2578534	46193	6

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