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Mutant Information

Mutant Name	FN1118-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1118-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21474460	C-T	HET	INTERGENIC
SBS	Chr1	40941249	G-A	HET	INTERGENIC
SBS	Chr1	4147612	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g08430
SBS	Chr1	42750093	C-T	HET	INTERGENIC
SBS	Chr11	10691514	G-T	HOMO	INTERGENIC
SBS	Chr11	11931771	C-T	HOMO	INTERGENIC
SBS	Chr11	26109145	G-T	HET	INTERGENIC
SBS	Chr11	26109147	A-G	HET	INTERGENIC
SBS	Chr11	26757239	T-C	HET	INTERGENIC
SBS	Chr12	10764920	T-C	HET	INTERGENIC
SBS	Chr12	21019966	G-A	HET	INTERGENIC
SBS	Chr12	23230333	T-C	HET	INTERGENIC
SBS	Chr12	24448807	G-T	HET	INTRON
SBS	Chr12	26501376	A-T	HET	INTRON
SBS	Chr2	10831772	C-T	HET	INTERGENIC
SBS	Chr2	21749871	A-C	HOMO	INTERGENIC
SBS	Chr2	32319212	T-A	HET	INTERGENIC
SBS	Chr3	17091817	C-T	HET	INTERGENIC
SBS	Chr3	22128158	G-A	HET	INTERGENIC
SBS	Chr3	31106056	T-A	HOMO	INTERGENIC
SBS	Chr3	4588688	T-C	HET	INTERGENIC
SBS	Chr3	9416477	C-T	HET	INTERGENIC
SBS	Chr4	27679859	G-A	HOMO	INTERGENIC
SBS	Chr5	14188232	C-T	HET	INTERGENIC
SBS	Chr5	21472089	A-G	HET	INTERGENIC
SBS	Chr5	3917085	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07350
SBS	Chr5	501105	G-A	HET	INTERGENIC
SBS	Chr6	21151493	G-A	HET	INTERGENIC
SBS	Chr6	6394367	G-A	HET	INTERGENIC
SBS	Chr7	17699183	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30030
SBS	Chr7	23356973	C-G	HET	INTERGENIC
SBS	Chr7	2431066	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g05330
SBS	Chr7	270904	C-T	HET	INTERGENIC
SBS	Chr7	8109862	C-T	HET	INTERGENIC
SBS	Chr8	13454298	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22320
SBS	Chr8	22065262	C-G	HOMO	INTERGENIC
SBS	Chr8	8314448	A-C	HOMO	INTERGENIC
SBS	Chr9	16040651	G-T	HET	INTRON
SBS	Chr9	16040652	C-T	HET	INTRON
SBS	Chr9	16040653	C-T	HET	INTRON
SBS	Chr9	2729982	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g05070
SBS	Chr9	3673900	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07380
SBS	Chr9	9507675	G-A	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1049987	1050003	16	LOC_Os08g02540
Deletion	Chr12	1143230	1143231	1
Deletion	Chr8	1537356	1537364	8	LOC_Os08g03310
Deletion	Chr10	2497864	2497867	3
Deletion	Chr3	2510252	2510261	9
Deletion	Chr3	2696519	2696522	3
Deletion	Chr9	4014987	4015003	16
Deletion	Chr6	5751061	5751062	1
Deletion	Chr8	6099845	6099848	3
Deletion	Chr9	6186645	6186659	14
Deletion	Chr7	6495317	6495322	5	LOC_Os07g11739
Deletion	Chr12	6779157	6779159	2
Deletion	Chr3	12182055	12182070	15	LOC_Os03g21290
Deletion	Chr1	12320377	12320467	90
Deletion	Chr3	18233320	18233321	1
Deletion	Chr2	19577666	19577669	3
Deletion	Chr1	20359435	20359446	11
Deletion	Chr1	20365152	20371612	6460	LOC_Os01g36680
Deletion	Chr8	21764032	21764229	197
Deletion	Chr8	22037951	22037981	30
Deletion	Chr8	22093001	22163000	70000	12
Deletion	Chr2	23454798	23454805	7
Deletion	Chr6	25744128	25744136	8
Deletion	Chr4	27022970	27022973	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	15380454	15380454	1
Insertion	Chr6	5911655	5911655	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12648447	12902171	LOC_Os09g20990

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	8247826	Chr7	21480608	LOC_Os08g13810
Translocation	Chr8	8248645	Chr7	21480604
Translocation	Chr11	11959380	Chr5	8143225

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