Search Results
| Mutant Information |
|---|
| Mutant Name | FN1119-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1119-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 3197226 | G-A | HET | UTR_5_PRIME | |
| SBS | Chr2 | 13306971 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 18958962 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 26996105 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 14117487 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 15448123 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 29419488 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 22230722 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 25834734 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr4 | 34373006 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 34373007 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 815768 | A-C | HET | INTERGENIC | |
| SBS | Chr5 | 815771 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 21244183 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 15956799 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr7 | 11707813 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 14662668 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 21461588 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 22566338 | T-C | HET | INTRON | |
| SBS | Chr8 | 3126046 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 9636022 | A-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 19332277 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 4893608 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 12288830 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 4131862 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 10598668 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g18710 |
| SBS | Chr11 | 11329335 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 18153523 | T-C | HET | INTRON | |
| SBS | Chr12 | 23195182 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g37770 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1529430 | 1529448 | 18 | |
| Deletion | Chr7 | 4909486 | 4909488 | 2 | |
| Deletion | Chr9 | 5696270 | 5696273 | 3 | LOC_Os09g10420 |
| Deletion | Chr9 | 6810505 | 6810510 | 5 | LOC_Os09g12060 |
| Deletion | Chr3 | 7448907 | 7448909 | 2 | |
| Deletion | Chr4 | 7678052 | 7678074 | 22 | |
| Deletion | Chr3 | 8646721 | 8646723 | 2 | |
| Deletion | Chr3 | 9448847 | 9448854 | 7 | |
| Deletion | Chr6 | 11364808 | 11364815 | 7 | |
| Deletion | Chr6 | 12706047 | 12706048 | 1 | |
| Deletion | Chr3 | 13258585 | 13258591 | 6 | LOC_Os03g22950 |
| Deletion | Chr6 | 14175647 | 14175688 | 41 | LOC_Os06g24200 |
| Deletion | Chr2 | 22733164 | 22733173 | 9 | LOC_Os02g37654 |
| Deletion | Chr7 | 24560432 | 24577047 | 16615 | 3 |
| Deletion | Chr8 | 24987025 | 24987032 | 7 | LOC_Os08g39490 |
| Deletion | Chr8 | 25371771 | 25371774 | 3 | |
| Deletion | Chr5 | 25671741 | 25671742 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 11740182 | 11740183 | 2 |
No Inversion
No Translocation