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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7690343	C-T	HOMO	INTRON
SBS	Chr1	39670033	A-G	HET	INTRON
SBS	Chr2	1114962	G-A	HET	INTERGENIC
SBS	Chr2	24771177	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g40860
SBS	Chr2	24779451	A-C	HET	INTRON
SBS	Chr2	25826480	G-C	HET	INTERGENIC
SBS	Chr2	31657726	A-C	HET	INTERGENIC
SBS	Chr3	14542051	C-A	HET	INTRON
SBS	Chr3	23307834	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	31667593	G-A	HET	INTERGENIC
SBS	Chr4	2421206	G-T	HET	INTERGENIC
SBS	Chr4	22849911	C-T	HET	INTRON
SBS	Chr4	28523963	C-A	HOMO	INTRON
SBS	Chr4	28523968	T-A	HOMO	INTRON
SBS	Chr6	17364850	G-A	HET	INTERGENIC
SBS	Chr6	24377401	G-A	HET	INTERGENIC
SBS	Chr7	6804648	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g12160
SBS	Chr7	18252378	T-G	HET	UTR_3_PRIME
SBS	Chr8	2908281	G-A	HET	INTERGENIC
SBS	Chr8	5947906	A-G	HET	SYNONYMOUS_CODING
SBS	Chr8	10149082	C-A	HET	INTRON
SBS	Chr8	23076638	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g36560
SBS	Chr10	541882	C-T	HET	INTRON
SBS	Chr10	541884	G-T	HET	INTRON
SBS	Chr10	14902642	G-T	HET	INTERGENIC
SBS	Chr10	15445853	T-C	HET	INTERGENIC
SBS	Chr10	15824033	A-T	HET	INTERGENIC
SBS	Chr10	17570204	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	17570776	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g33370
SBS	Chr10	17570777	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	20637967	G-A	HET	INTERGENIC
SBS	Chr10	20777089	T-C	HET	UTR_3_PRIME
SBS	Chr11	11515246	A-G	HOMO	INTRON
SBS	Chr11	11515247	G-T	HOMO	INTRON
SBS	Chr11	14729804	C-T	HOMO	INTERGENIC
SBS	Chr11	15963208	C-T	HOMO	INTERGENIC
SBS	Chr11	15963209	C-T	HOMO	INTERGENIC
SBS	Chr11	19405667	G-A	HET	INTRON
SBS	Chr11	25659838	G-A	HOMO	INTRON
SBS	Chr11	27411739	A-C	HOMO	INTRON
SBS	Chr12	11381732	A-C	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	29467	29471	4	LOC_Os10g01020
Deletion	Chr5	1805536	1805546	10
Deletion	Chr9	2060769	2060771	2
Deletion	Chr9	5396332	5396338	6
Deletion	Chr6	7566309	7566317	8	LOC_Os06g13650
Deletion	Chr7	10676487	10676514	27
Deletion	Chr11	16811009	16811014	5
Deletion	Chr2	17368350	17368364	14
Deletion	Chr6	17453582	17453583	1
Deletion	Chr8	17840830	17840834	4
Deletion	Chr6	17975838	17975839	1
Deletion	Chr8	18409937	18409945	8
Deletion	Chr3	19175658	19175663	5
Deletion	Chr1	20065693	20065710	17
Deletion	Chr1	24701259	24701279	20
Deletion	Chr8	25248634	25248790	156	LOC_Os08g39850
Deletion	Chr8	26848984	26848987	3
Deletion	Chr7	27801052	27801097	45
Deletion	Chr5	29047404	29047406	2
Deletion	Chr3	31453295	31453314	19
Deletion	Chr1	33202433	33202434	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	30630610	30630611	2
Insertion	Chr3	25579459	25579460	2
Insertion	Chr4	17630012	17630014	3
Insertion	Chr10	1742093	1742096	4
Insertion	Chr10	21711155	21711155	1
Insertion	Chr11	26038899	26038900	2
Insertion	Chr12	25804867	25804870	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	15953938	18240335	LOC_Os04g26980
Inversion	Chr7	17774614	17946033	2
Inversion	Chr7	17775036	17946031	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9371952	Chr5	20484676
Translocation	Chr11	28258795	Chr8	25850590	2
Translocation	Chr11	28258815	Chr8	25820961	2
Translocation	Chr11	28410378	Chr8	25850635	2

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