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| Mutant Information |
|---|
| Mutant Name | FN1122-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1122-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13094101 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g23310 |
| SBS | Chr1 | 24292437 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 27206905 | T-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 29820149 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 6151617 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 7823136 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 14911105 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 18838613 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 12558659 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 5255877 | G-C | HET | INTRON | |
| SBS | Chr12 | 6635952 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 8247080 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 15459194 | A-G | HOMO | UTR_3_PRIME | |
| SBS | Chr3 | 12332465 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 24175212 | G-C | HOMO | INTRON | |
| SBS | Chr3 | 30157618 | C-T | HOMO | INTRON | |
| SBS | Chr3 | 34660346 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 6764276 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g12680 |
| SBS | Chr4 | 19536458 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 25207236 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 26961032 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 1965199 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 19810077 | G-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 1450944 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 19727518 | T-C | HET | INTRON | |
| SBS | Chr7 | 21071110 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 24915486 | G-T | HET | INTRON | |
| SBS | Chr7 | 25622763 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 25624655 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 26844200 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 8563563 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr8 | 21077033 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 14598499 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 955264 | A-G | HOMO | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 172088 | 172092 | 4 | |
| Deletion | Chr2 | 788543 | 788544 | 1 | LOC_Os02g02360 |
| Deletion | Chr1 | 4656640 | 4656654 | 14 | |
| Deletion | Chr3 | 5036364 | 5037031 | 667 | |
| Deletion | Chr3 | 5284659 | 5284672 | 13 | |
| Deletion | Chr12 | 6240379 | 6531897 | 291518 | 38 |
| Deletion | Chr11 | 6336705 | 6336706 | 1 | |
| Deletion | Chr10 | 7806444 | 7806450 | 6 | |
| Deletion | Chr9 | 7904366 | 7904377 | 11 | |
| Deletion | Chr2 | 10167949 | 10167954 | 5 | |
| Deletion | Chr9 | 15472623 | 15472624 | 1 | |
| Deletion | Chr12 | 16655713 | 16655717 | 4 | |
| Deletion | Chr1 | 19512943 | 19512952 | 9 | |
| Deletion | Chr9 | 19656539 | 19656558 | 19 | |
| Deletion | Chr1 | 20634738 | 20634739 | 1 | |
| Deletion | Chr4 | 21776040 | 21776043 | 3 | |
| Deletion | Chr10 | 21868716 | 21868731 | 15 | |
| Deletion | Chr1 | 23012900 | 23012917 | 17 | |
| Deletion | Chr1 | 29507453 | 29507458 | 5 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 9950302 | 9950304 | 3 | |
| Insertion | Chr4 | 7471318 | 7471318 | 1 | |
| Insertion | Chr5 | 14520416 | 14520417 | 2 | |
| Insertion | Chr8 | 14740268 | 14740273 | 6 |
No Inversion
No Translocation