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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13688096	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g24294
SBS	Chr1	38849941	C-T	HET	INTERGENIC
SBS	Chr1	40740406	C-T	HET	INTRON
SBS	Chr2	34074269	G-A	HET	INTRON
SBS	Chr3	7851774	T-A	HET	INTRON
SBS	Chr3	26080869	A-T	HOMO	INTRON
SBS	Chr3	33127137	C-A	HOMO	INTERGENIC
SBS	Chr3	34834641	C-G	HET	INTERGENIC
SBS	Chr4	3748349	T-C	HET	INTERGENIC
SBS	Chr4	20434579	C-T	HET	INTERGENIC
SBS	Chr4	20434582	G-A	HET	INTERGENIC
SBS	Chr4	29250897	G-A	HET	INTERGENIC
SBS	Chr5	9243718	G-C	HET	INTERGENIC
SBS	Chr5	24619746	A-T	HET	INTERGENIC
SBS	Chr6	3988818	C-T	HOMO	INTERGENIC
SBS	Chr6	4125770	A-T	HOMO	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr7	4131410	G-A	HET	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr9	4915841	A-T	HOMO	INTERGENIC
SBS	Chr9	18543292	G-A	HET	INTERGENIC
SBS	Chr9	21143302	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g36640
SBS	Chr11	21356915	A-T	HOMO	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1549646	1549654	8
Deletion	Chr4	2529990	2530011	21	LOC_Os04g05104
Deletion	Chr10	2868268	2868300	32
Deletion	Chr9	5340549	5345156	4607
Deletion	Chr9	5601593	5601597	4	LOC_Os09g10280
Deletion	Chr8	6195910	6195916	6
Deletion	Chr5	6279154	6279171	17
Deletion	Chr9	8828888	8828918	30
Deletion	Chr8	9103435	9103437	2	LOC_Os08g15060
Deletion	Chr10	10653667	10653671	4
Deletion	Chr11	10872286	10872296	10
Deletion	Chr8	11733343	11781699	48356	7
Deletion	Chr7	11755775	11755786	11
Deletion	Chr4	13794770	13794771	1
Deletion	Chr9	18137992	18199132	61140	10
Deletion	Chr9	21190672	21190679	7	LOC_Os09g36730
Deletion	Chr8	21813578	21813580	2
Deletion	Chr5	24506822	24506827	5
Deletion	Chr5	25914787	25914789	2
Deletion	Chr6	27338083	27338084	1
Deletion	Chr1	43175836	43175845	9	LOC_Os01g74550

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	17850754	17850755	2
Insertion	Chr2	35638525	35638528	4
Insertion	Chr7	14659957	14659957	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8631473	8822691
Inversion	Chr7	8631503	8822702
Inversion	Chr11	8924048	9194030	LOC_Os11g16590
Inversion	Chr4	20359028	20477743	LOC_Os04g33610
Inversion	Chr8	24164116	24355083	2
Inversion	Chr1	35941564	35988634	LOC_Os01g62100
Inversion	Chr1	35950848	35988634

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2240001	Chr1	35941569	2
Translocation	Chr11	2240014	Chr1	35950885	LOC_Os11g05110
Translocation	Chr8	4436591	Chr1	2998298
Translocation	Chr3	8733585	Chr2	34031715	2
Translocation	Chr10	9381492	Chr4	29290775	2
Translocation	Chr8	11733351	Chr6	25692691	LOC_Os06g42720
Translocation	Chr8	11781695	Chr6	25692678	2

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