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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24506601	G-A	HET	INTERGENIC
SBS	Chr10	19424978	C-T	HOMO	INTERGENIC
SBS	Chr10	19424979	A-T	HOMO	INTERGENIC
SBS	Chr10	3775652	G-C	HET	INTRON
SBS	Chr10	619878	T-G	HOMO	INTRON
SBS	Chr11	9707882	C-T	HET	INTERGENIC
SBS	Chr12	9856664	C-T	HET	INTERGENIC
SBS	Chr2	12308803	G-A	HOMO	INTERGENIC
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	27162114	C-T	HET	INTERGENIC
SBS	Chr3	28043010	G-A	HET	INTERGENIC
SBS	Chr4	30704282	C-A	HOMO	INTRON
SBS	Chr5	23541874	T-A	HET	INTERGENIC
SBS	Chr5	29012282	T-C	HET	INTRON
SBS	Chr5	7732920	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g13910
SBS	Chr6	21043479	G-A	HET	INTERGENIC
SBS	Chr7	14321260	G-A	HET	INTERGENIC
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	19169336	T-G	HET	INTERGENIC
SBS	Chr9	19109657	T-C	HET	INTERGENIC
SBS	Chr9	717387	C-G	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3796665	3796666	1
Deletion	Chr10	7689185	7689191	6	LOC_Os10g14180
Deletion	Chr9	9550001	9611000	61000	8
Deletion	Chr1	9780736	9780740	4
Deletion	Chr11	10360797	10360819	22	LOC_Os11g18366
Deletion	Chr11	11179473	11179477	4
Deletion	Chr11	11753465	11753480	15
Deletion	Chr11	20302187	20302583	396
Deletion	Chr12	22131809	22131840	31	LOC_Os12g36100
Deletion	Chr2	22609411	22609412	1
Deletion	Chr7	23513001	23731000	218000	32
Deletion	Chr11	25695032	25695447	415	LOC_Os11g42660
Deletion	Chr11	26113764	26113780	16
Deletion	Chr4	27946645	27946646	1
Deletion	Chr4	29338907	29339150	243	LOC_Os04g49210
Deletion	Chr1	35350745	35350753	8

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	23632293	23632296	4
Insertion	Chr7	25230591	25230599	9
Insertion	Chr8	16256240	16256243	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4589628	4623006	LOC_Os10g08450

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	11301506	Chr7	23731645	LOC_Os11g19610
Translocation	Chr11	25695039	Chr7	23733113
Translocation	Chr11	25695436	Chr7	23512759	2

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