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| Mutant Information |
|---|
| Mutant Name | FN1129-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1129-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12011981 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 12011982 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 28908828 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 36372779 | A-C | HOMO | INTRON | |
| SBS | Chr10 | 13982698 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 12707277 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 14675683 | A-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 1954228 | T-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 223638 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 29362400 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 11759407 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 20939310 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 35243934 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g62220 |
| SBS | Chr3 | 7567017 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr4 | 11292823 | T-C | HET | INTRON | |
| SBS | Chr4 | 6679019 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g12130 |
| SBS | Chr5 | 25691902 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 7505312 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 24837954 | T-G | HOMO | INTRON | |
| SBS | Chr6 | 26262132 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 18629577 | A-G | HET | INTRON | |
| SBS | Chr7 | 4731309 | C-A | HOMO | INTRON | |
| SBS | Chr8 | 21746213 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 26790605 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr8 | 5174220 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 9489534 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 21890963 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 3492686 | A-G | HET | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 210289 | 210304 | 15 | |
| Deletion | Chr2 | 212723 | 212725 | 2 | |
| Deletion | Chr9 | 3480362 | 3480364 | 2 | |
| Deletion | Chr9 | 3492672 | 3492674 | 2 | |
| Deletion | Chr5 | 7283244 | 7283245 | 1 | |
| Deletion | Chr1 | 10551462 | 10551472 | 10 | |
| Deletion | Chr3 | 11053806 | 11053817 | 11 | |
| Deletion | Chr3 | 13420620 | 13420622 | 2 | |
| Deletion | Chr1 | 13905732 | 13905738 | 6 | |
| Deletion | Chr4 | 18762029 | 18762055 | 26 | |
| Deletion | Chr8 | 19995140 | 19995141 | 1 | |
| Deletion | Chr8 | 20031989 | 20031990 | 1 | |
| Deletion | Chr5 | 21299182 | 21299186 | 4 | |
| Deletion | Chr8 | 21523839 | 21523854 | 15 | |
| Deletion | Chr9 | 21887527 | 21890954 | 3427 | LOC_Os09g37958 |
| Deletion | Chr4 | 21980013 | 21980014 | 1 | |
| Deletion | Chr12 | 23572936 | 23572939 | 3 | |
| Deletion | Chr6 | 23766448 | 23766449 | 1 | |
| Deletion | Chr8 | 27057613 | 27057641 | 28 | |
| Deletion | Chr2 | 32879001 | 33056000 | 177000 | 27 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 4260793 | 4260796 | 4 | |
| Insertion | Chr4 | 6616146 | 6616146 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 7657845 | Chr4 | 11640576 | 2 |
| Translocation | Chr11 | 8021100 | Chr4 | 11640574 | 2 |
| Translocation | Chr9 | 11531193 | Chr3 | 11405300 | LOC_Os03g20180 |
| Translocation | Chr12 | 23424508 | Chr6 | 1801608 |