Search Results
| Mutant Information |
|---|
| Mutant Name | FN1131-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1131-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 379461 | G-A | HET | INTRON | |
| SBS | Chr1 | 27457021 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 29339548 | G-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 1243705 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 9062776 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 18324265 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 1850153 | A-C | HET | INTERGENIC | |
| SBS | Chr3 | 27112731 | T-C | HET | INTRON | |
| SBS | Chr3 | 32429162 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 30904662 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr5 | 6355620 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 21149034 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 16595957 | T-A | HET | INTRON | |
| SBS | Chr6 | 20565593 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 22677815 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 4786552 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 8440863 | G-C | HOMO | INTRON | |
| SBS | Chr8 | 15324796 | G-A | HET | INTRON | |
| SBS | Chr10 | 9785256 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 14183016 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 14570736 | G-C | HOMO | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 4031992 | 4031995 | 3 | LOC_Os09g07900 |
| Deletion | Chr4 | 7069725 | 7069737 | 12 | LOC_Os04g12780 |
| Deletion | Chr3 | 8137513 | 8137534 | 21 | |
| Deletion | Chr3 | 9640266 | 9640270 | 4 | |
| Deletion | Chr12 | 12218237 | 12218242 | 5 | LOC_Os12g21730 |
| Deletion | Chr6 | 13376322 | 13376339 | 17 | |
| Deletion | Chr6 | 15068001 | 15130000 | 62000 | 10 |
| Deletion | Chr4 | 15507878 | 15507881 | 3 | |
| Deletion | Chr4 | 15554697 | 15554709 | 12 | LOC_Os04g26650 |
| Deletion | Chr11 | 16222689 | 16222690 | 1 | |
| Deletion | Chr11 | 16243496 | 16243498 | 2 | |
| Deletion | Chr11 | 18084824 | 18084827 | 3 | |
| Deletion | Chr5 | 20193674 | 20193692 | 18 | LOC_Os05g34150 |
| Deletion | Chr8 | 22806554 | 22806569 | 15 | |
| Deletion | Chr5 | 24524583 | 24524585 | 2 | |
| Deletion | Chr6 | 24932227 | 24932234 | 7 | LOC_Os06g41640 |
| Deletion | Chr2 | 26459413 | 26459418 | 5 | |
| Deletion | Chr4 | 30826658 | 30826676 | 18 | |
| Deletion | Chr1 | 31457736 | 31457737 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 22800889 | 22800889 | 1 | |
| Insertion | Chr1 | 23445831 | 23445832 | 2 | |
| Insertion | Chr3 | 16319190 | 16319190 | 1 | |
| Insertion | Chr9 | 8274570 | 8274570 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 1746108 | 1851106 | LOC_Os04g04010 |
| Inversion | Chr4 | 1746121 | 1851147 | LOC_Os04g04010 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 18399084 | Chr5 | 20430020 | |
| Translocation | Chr10 | 18399088 | Chr5 | 20423819 | |
| Translocation | Chr5 | 20423255 | Chr1 | 3725943 | LOC_Os01g07760 |
| Translocation | Chr5 | 20423783 | Chr1 | 3725930 | LOC_Os01g07760 |