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| Mutant Information |
|---|
| Mutant Name | FN1133-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1133-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17317054 | C-T | HET | INTRON | |
| SBS | Chr1 | 1996336 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g04480 |
| SBS | Chr1 | 29216596 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 32232025 | A-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr10 | 20373102 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 5185829 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 9305401 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 26748531 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g44190 |
| SBS | Chr2 | 29210171 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 29282676 | C-T | HET | INTRON | |
| SBS | Chr3 | 14751742 | C-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 18791695 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g32850 |
| SBS | Chr4 | 28309970 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g47710 |
| SBS | Chr4 | 34626586 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g58140 |
| SBS | Chr5 | 9911578 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g17300 |
| SBS | Chr6 | 23301005 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 7044364 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 7044365 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g12870 |
| SBS | Chr7 | 16266089 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 28706966 | T-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 24495326 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g38740 |
| SBS | Chr8 | 2640163 | G-C | HET | INTERGENIC | |
| SBS | Chr9 | 16952588 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 18766302 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 5328802 | T-A | HET | INTRON |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 433213 | 433215 | 2 | |
| Deletion | Chr4 | 2271462 | 2271473 | 11 | LOC_Os04g04720 |
| Deletion | Chr6 | 7673519 | 7673539 | 20 | |
| Deletion | Chr10 | 10986906 | 10986909 | 3 | |
| Deletion | Chr2 | 11061368 | 11061371 | 3 | |
| Deletion | Chr3 | 14534725 | 14534726 | 1 | LOC_Os03g25420 |
| Deletion | Chr3 | 14607642 | 14607646 | 4 | |
| Deletion | Chr7 | 15370601 | 15370602 | 1 | |
| Deletion | Chr8 | 15592876 | 15592881 | 5 | |
| Deletion | Chr4 | 19694387 | 19694393 | 6 | 2 |
| Deletion | Chr4 | 20403395 | 20403402 | 7 | |
| Deletion | Chr1 | 23718106 | 23718129 | 23 | |
| Deletion | Chr4 | 24470443 | 24470452 | 9 | |
| Deletion | Chr5 | 29103569 | 29103581 | 12 | |
| Deletion | Chr3 | 30312921 | 30312924 | 3 | |
| Deletion | Chr4 | 34417043 | 34417046 | 3 | |
| Deletion | Chr4 | 34559599 | 34559600 | 1 |
Insertions: 6
No Inversion
No Translocation