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| Mutant Information |
|---|
| Mutant Name | FN1134-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1134-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11327349 | G-A | HET | INTRON | |
| SBS | Chr1 | 18845021 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 6108875 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 3987835 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 14259175 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g24870 |
| SBS | Chr2 | 13413783 | C-G | HET | INTRON | |
| SBS | Chr3 | 14946535 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 2231926 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 26073673 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 1593755 | A-C | HET | INTERGENIC | |
| SBS | Chr4 | 23590704 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 5133669 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 5133671 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 21728288 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 758149 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 9848444 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 20627408 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 2307077 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 7327694 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 3868213 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07670 |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1394466 | 1394477 | 11 | LOC_Os06g03600 |
| Deletion | Chr9 | 2251072 | 2251073 | 1 | |
| Deletion | Chr12 | 3789833 | 3789840 | 7 | |
| Deletion | Chr4 | 7284695 | 7284711 | 16 | |
| Deletion | Chr5 | 9714173 | 9714179 | 6 | |
| Deletion | Chr1 | 14745802 | 14745817 | 15 | |
| Deletion | Chr11 | 17031172 | 17031174 | 2 | |
| Deletion | Chr4 | 17412855 | 17412858 | 3 | |
| Deletion | Chr9 | 18202001 | 19024000 | 822000 | 130 |
| Deletion | Chr5 | 24166345 | 24166355 | 10 | |
| Deletion | Chr7 | 29432735 | 29432737 | 2 | |
| Deletion | Chr3 | 34514602 | 34514609 | 7 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 27699077 | 27699078 | 2 | |
| Insertion | Chr2 | 31487063 | 31487064 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 14960831 | 16590792 | LOC_Os12g28100 |
| Inversion | Chr12 | 14992127 | 16600231 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 12091092 | Chr1 | 36795533 | LOC_Os01g63480 |
| Translocation | Chr12 | 12091304 | Chr1 | 36795442 | LOC_Os01g63480 |
| Translocation | Chr12 | 18585973 | Chr9 | 3826396 | LOC_Os09g07614 |
| Translocation | Chr12 | 19095638 | Chr8 | 972914 | LOC_Os12g31729 |
| Translocation | Chr12 | 19100488 | Chr8 | 973331 |